PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000312.1_g00018.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 318aa    MW: 35470.1 Da    PI: 9.7943
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000312.1_g00018.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.51.5e-1374118147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  Itr_sc000312.1_g00018.1  74 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 118
                              789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.72E-1768124IPR009057Homeodomain-like
PROSITE profilePS5129415.40869123IPR017930Myb domain
TIGRFAMsTIGR015571.4E-1872121IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.1E-672124IPR009057Homeodomain-like
SMARTSM007175.3E-1173121IPR001005SANT/Myb domain
PfamPF002492.6E-1174118IPR001005SANT/Myb domain
CDDcd001671.87E-876119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MVSVYPNVPP SPEFFYHFAG DPTKTGLPAL HSNQPVTVMN TSAVPASENS NSVGLLPEDS  60
NKKVRKPYTI TKSRESWTEQ EHDKFLEALQ LFDRDWKKIE AFVGSKTVIQ IRSHAQKYFL  120
KVQKSGASEH VPPPRPKRKA SHPYPQKAPK SGPPSSLLEP GYVIRPDSLS VPANSIGNAV  180
LSHWSYSNVP GFSISHVTKD DIQLLGTAMS KNCSSSSNES TPRICRTNRT SNQGKEKQNK  240
QREMPDFAQV YSYIGSVFDP NSSDHLQRLK QMDPINIETA LMLMKNLSVN LISPEFEDHR  300
RLLLSNNLGA DKLSQVLS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00423DAPTransfer from AT4G01280Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019190601.10.0PREDICTED: protein REVEILLE 6
SwissprotC0SVG51e-95RVE5_ARATH; Protein REVEILLE 5
TrEMBLA0A068UME01e-146A0A068UME0_COFCA; Uncharacterized protein
STRINGXP_009617756.11e-144(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9982478
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01280.14e-96MYB_related family protein
Publications ? help Back to Top
  1. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]