PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000310.1_g00044.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 742aa    MW: 80422.1 Da    PI: 6.2037
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000310.1_g00044.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS332.38.9e-1023797412374
                     GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                              +++L++ Ae v+sg+  laq +Larl+++ sp g+p+qR+a+y +e L+  l++ +++ ++  p+s++ + + + ++ a+k fse+
  Itr_sc000310.1_g00044.1 379 IDQLFKTAELVQSGNPILAQGILARLNHHLSPIGKPFQRAAFYCKESLQLLLQHATNNNMNPPPSSSSVPFSLIFKIGAYKSFSEI 464
                              789***************************************************666666666666666666************** PP

                     GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelg 173
                              sP+  f+++t+Nqa+lea+eg +r+ i+Dfdi++G+QW++L+q+La R++g+psl+iT+++sp+ +++ el  t+e+L +fA+e++
  Itr_sc000310.1_g00044.1 465 SPVSPFANFTCNQALLEALEGFDRIRIVDFDIGYGGQWASLMQELALRSGGSPSLKITVLASPAMHDQLELGLTRENLIHFASEIN 550
                              ************************************************************************************** PP

                     GRAS 174 vpfefnvlvakrledlele.eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfl 258
                              + fef+vl  ++l++ + +  L+v+ +Ea+aVnl +  ++++    +l++  + vL++vk+l Pk+vv v++ +d+++  F ++++
  Itr_sc000310.1_g00044.1 551 MAFEFEVLSIDSLNSTSWSlPLHVSDNEAIAVNLPVGCFTTY----QLSH--PLVLRFVKQLMPKIVVSVDRVCDRTDLLFPNHVI 630
                              ********999998886653589999**************99....4444..77******************************** PP

                     GRAS 259 ealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkv 344
                              +al+yy+ l++sl+a    + ++ +k+Er+ll++ i+++++ + ++     e+ ++Wr  + ++GF+p+++s+++++qa+++++++
  Itr_sc000310.1_g00044.1 631 HALQYYANLLESLDAV-NVNFDALQKIERFLLHPGIEKIIMGRYRS----PEKTQHWRTLFLSSGFSPLTFSNFTESQAECVVKRT 711
                              *************665.3466999******************9999....9*********************************** PP

                     GRAS 345 ksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                              +++g++ve+++ slvl+W++++L+svSaWr
  Itr_sc000310.1_g00044.1 712 PVRGFHVEKRQSSLVLCWQRKELISVSAWR 741
                              *****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.236352721IPR005202Transcription factor GRAS
PfamPF035143.1E-99379741IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 742 aa     Download sequence    Send to blast
MKGMPFPFEF ERKGVIELGN RNHRNCVSGN HCWDIKDCVV GSPGGSNSEP TSVLDRPLAS  60
SSTLSSSCGG GGGETDAARV AAVSGNPASK WQQDNTTATS SNAGGGESEL LQPVPPSLDF  120
GGGGAAAGAA VGGGETAEKC GMEEWDSVLS ESPGQEPLLR WIMGDVDDPS MANLNKVLQV  180
GGGGGAAEYD FNGGFGVVDH GFGAVDPVSS SGESFLPSIP ISGSNFPANR LPNPPASLPG  240
FKFSAPPPLF PPVSNNLGPA AFNPSLLEPS DLKPQIFNPG NPHFLINQPP QNPSFLMPLP  300
FSRPELAPPQ AKRHNPGGNL ESPGPQIPRG LFSDQQTPSP HHMLPHQLQL LPNYPQRPKP  360
PDISGEEMGH FHQNQQSMID QLFKTAELVQ SGNPILAQGI LARLNHHLSP IGKPFQRAAF  420
YCKESLQLLL QHATNNNMNP PPSSSSVPFS LIFKIGAYKS FSEISPVSPF ANFTCNQALL  480
EALEGFDRIR IVDFDIGYGG QWASLMQELA LRSGGSPSLK ITVLASPAMH DQLELGLTRE  540
NLIHFASEIN MAFEFEVLSI DSLNSTSWSL PLHVSDNEAI AVNLPVGCFT TYQLSHPLVL  600
RFVKQLMPKI VVSVDRVCDR TDLLFPNHVI HALQYYANLL ESLDAVNVNF DALQKIERFL  660
LHPGIEKIIM GRYRSPEKTQ HWRTLFLSSG FSPLTFSNFT ESQAECVVKR TPVRGFHVEK  720
RQSSLVLCWQ RKELISVSAW RC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-3539174116375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019189016.10.0PREDICTED: scarecrow-like protein 22
TrEMBLA0A0V0IWJ20.0A0A0V0IWJ2_SOLCH; Putative scarecrow-like protein 22-like
STRINGPGSC0003DMT4000667990.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62532235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-139GRAS family protein