PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000308.1_g00011.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 453aa    MW: 50461.1 Da    PI: 4.9798
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000308.1_g00011.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS101.41.3e-312924081120
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                              l++lL+ cA+av+ +d + a+++L+r+++++s++gd mqRla+yf+ +L+ar+a+s++++ykal   +      +++l+a++l+  
  Itr_sc000308.1_g00011.1 292 LRSLLMLCAQAVAVEDIRTANEYLKRIRQHSSQTGDDMQRLAHYFADGLEARIAGSGTRIYKALMKYPRY---AARALKAFQLYCS 374
                              6899************************************************************988887...899********** PP

                     GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdis 120
                               +P+lk+s+l  N++I   +++++ +HiiDf+i+
  Itr_sc000308.1_g00011.1 375 SCPFLKISYLFSNKTITTLAQNASSLHIIDFGIG 408
                              ********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098521.38266453IPR005202Transcription factor GRAS
PfamPF035144.6E-29292408IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MANEGVCETL VDRNEEMGNL NSEEAPLPQS HQSLLNEDYD LRDQMLKWIN QMLMEDNAEE  60
KAYMFRQSAA LKDAERSFYE LIGEDYPPSP NLQRVPDLDR NENYGNDDSL CPNRDPYPRD  120
RQTTSDHVAS STTFQSSSLL GQGTVNDGTV DFAASSITIP DLSNCTESVE KGVREASSFL  180
PTRNSLLVDG IGAEKNTGNQ DTLEGQRGTK NTLREDTHLA EGRSYKQSAI YAEPSIKQEE  240
FDKVLLWSGE DESSLCHSLR GVLCEGNDDS KGSNRKKSSG KKPGSERTVV DLRSLLMLCA  300
QAVAVEDIRT ANEYLKRIRQ HSSQTGDDMQ RLAHYFADGL EARIAGSGTR IYKALMKYPR  360
YAARALKAFQ LYCSSCPFLK ISYLFSNKTI TTLAQNASSL HIIDFGIGAR HFRAFVVETS  420
LVQITHQTSN LLVSDEGNPQ SLCKGVYWVN PAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-1129940726137Protein SCARECROW
5b3h_A2e-1129940725136Protein SCARECROW
5b3h_D2e-1129940725136Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019171941.10.0PREDICTED: scarecrow-like protein 14 isoform X2
TrEMBLA0A1U8GLI81e-111A0A1U8GLI8_CAPAN; scarecrow-like protein 14
TrEMBLA0A1U8GTL41e-111A0A1U8GTL4_CAPAN; Scarecrow-like protein 14
STRINGPGSC0003DMT4000162581e-107(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.14e-59GRAS family protein