PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000308.1_g00009.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 668aa    MW: 75554.4 Da    PI: 6.4175
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000308.1_g00009.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS355.67.5e-1092926661374
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                              l++lL+ cA+av+ +d + a+ +L+r+++++s++gd mqRla+yf+ +L+ar+a+s++++ kal   +      +++l+a+kl+  
  Itr_sc000308.1_g00009.1 292 LRSLLMLCAQAVAVEDIRTANDYLKRIRQHSSQTGDDMQRLAHYFADGLEARIAGSGTRIHKALVKYPRY---AARALKAFKLYLS 374
                              6899************************************************************999988...89*********** PP

                     GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdis..qGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakf 168
                              ++P+ k+s++  N++I   +++++ +HiiDf+i+   G+QWp+L+q L+sRp+gpp+lRiTg++ p sg   +e+ e tg+ La +
  Itr_sc000308.1_g00009.1 375 CCPFRKISNMFSNKTITILAQNASSLHIIDFGIGtlFGFQWPCLIQHLSSRPGGPPKLRITGIDFPLSGfrPAERAEGTGRLLAYY 460
                              *********************************8446*****************************99999*************** PP

                     GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnses 252
                              Ae+++vpfefn+ +ak++e++++e+L++ +gE+laVn+ ++l +llde+v ++s  +rd+vLkl+ +++P+v+++   ++ +n++ 
  Itr_sc000308.1_g00009.1 461 AEKFNVPFEFNA-IAKQWETITVEDLKIIEGEVLAVNCLYRLRNLLDETVVVNSlnPRDTVLKLIHDVRPDVFIHGILNSACNAPF 545
                              ************.7************************************9999989***************************** PP

                     GRAS 253 FlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338
                              F  rf  al++ys++fd+lea++pre  er+ +E  ++g++++n++ace +er+er et++kW++r ++aGF ++pl+ +++k   
  Itr_sc000308.1_g00009.1 546 FTSRFRVALSHYSTVFDMLEATIPREVPERMLIESYIFGQQAMNAIACEDTERVERPETYKKWQARNTRAGFLQLPLNREIVKMSV 631
                              ************************************************************************************** PP

                     GRAS 339 lllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                              ++l++++++ + ++e+ ++l+lgWk+r+L+++S+W+
  Itr_sc000308.1_g00009.1 632 HMLKRYHKE-FVIDEDGHWLLLGWKGRALFALSSWK 666
                              *******55.*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.906266647IPR005202Transcription factor GRAS
PfamPF035142.6E-106292666IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MDRGPYETTS QFNFEGEYEH YDLRDQMLKW INQMLMEDNV EEKAYMSRQS AALKDAERSF  60
YELIGEEYPP SPNLHRVPDL DRNENYGGSG YYGSGDNGND DSLCPNWVPN PRDRQTTSDH  120
VPVNVALSTT SQPSSLLGQG TVNDGTVDFV ASTITIPDIS NFTESVEKGI REGSSFLPTR  180
NSLLVDGVGA EKNTGSQDLL EGRRGKKNMC RDDMHLPEGR FYKQSAIYAE PSIKQEEFDE  240
VLLCSEEDES NLCHSLRNVS CESATGNDES KGSNRKKSSG KKPWSNQAVV DLRSLLMLCA  300
QAVAVEDIRT ANDYLKRIRQ HSSQTGDDMQ RLAHYFADGL EARIAGSGTR IHKALVKYPR  360
YAARALKAFK LYLSCCPFRK ISNMFSNKTI TILAQNASSL HIIDFGIGTL FGFQWPCLIQ  420
HLSSRPGGPP KLRITGIDFP LSGFRPAERA EGTGRLLAYY AEKFNVPFEF NAIAKQWETI  480
TVEDLKIIEG EVLAVNCLYR LRNLLDETVV VNSLNPRDTV LKLIHDVRPD VFIHGILNSA  540
CNAPFFTSRF RVALSHYSTV FDMLEATIPR EVPERMLIES YIFGQQAMNA IACEDTERVE  600
RPETYKKWQA RNTRAGFLQL PLNREIVKMS VHMLKRYHKE FVIDEDGHWL LLGWKGRALF  660
ALSSWKPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-462966668375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019171942.10.0PREDICTED: scarecrow-like protein 14 isoform X3
TrEMBLA0A1U8GLI80.0A0A1U8GLI8_CAPAN; scarecrow-like protein 14
TrEMBLA0A1U8GTL40.0A0A1U8GTL4_CAPAN; Scarecrow-like protein 14
STRINGXP_009611175.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.11e-168GRAS family protein