PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000306.1_g00019.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | MYB | ||||||||
Protein Properties | Length: 166aa MW: 19156.8 Da PI: 9.1335 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.7 | 3.2e-14 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l+ ++ +G + W+ ++ g+ R++k+c++rw +yl Itr_sc000306.1_g00019.1 14 KGLWSKEEDDKLKTFIESHGHKKWRQLPKIAGLSRCGKSCRLRWMNYL 61 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.8 | 2.1e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+++ +Ede++v+++++lG++ W++ a+ ++ gR+++++k++w+++l Itr_sc000306.1_g00019.1 67 KGAFSVQEDEIIVKLHNKLGNK-WSAMAELLP-GRSDNEIKNHWHTHL 112 799*******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.587 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.11E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.1E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.3E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-22 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.91E-10 | 17 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.644 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-25 | 69 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.30E-10 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MVKTPSVDQT GIKKGLWSKE EDDKLKTFIE SHGHKKWRQL PKIAGLSRCG KSCRLRWMNY 60 LRPGLKKGAF SVQEDEIIVK LHNKLGNKWS AMAELLPGRS DNEIKNHWHT HLKNRAKHTQ 120 KPEESMEELL PPSAETSEFS DFEFKPPQDD IYNILNPDEV ALPQNS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-26 | 14 | 116 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 2e-26 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
1mse_C | 1e-26 | 14 | 116 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 1e-26 | 14 | 116 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}. | |||||
UniProt | Transcription factor involved in salt stress response. Confers tolerance to salt stress (PubMed:22575450). Involved in distinct cellular processes in response to osmotic stress, including control of primary metabolism and negative regulation of short-term transcriptional responses to osmotic stress (PubMed:19211694). Can activate the steps necessary for aliphatic suberin synthesis and deposition of cell wall-associated suberin-like lamellae. Involved in the production of aliphatic suberin under abiotic stress conditions (PubMed:25060192). {ECO:0000269|PubMed:19211694, ECO:0000269|PubMed:22575450, ECO:0000269|PubMed:25060192}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) and gravity in roots. {ECO:0000269|PubMed:24902892}. | |||||
UniProt | INDUCTION: Induced by salt stress (PubMed:19211694, PubMed:25060192). Induced by osmotic stress (PubMed:19211694). Induced by abscisic acid (PubMed:25060192). {ECO:0000269|PubMed:19211694, ECO:0000269|PubMed:25060192}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019158784.1 | 1e-104 | PREDICTED: myb-related protein 308-like | ||||
Swissprot | Q9FJP2 | 2e-49 | MYB53_ARATH; Transcription factor MYB53 | ||||
Swissprot | Q9M0J5 | 2e-49 | MYB41_ARATH; Transcription factor MYB41 | ||||
TrEMBL | A0A3Q7HD52 | 1e-58 | A0A3Q7HD52_SOLLC; Uncharacterized protein | ||||
STRING | Solyc07g054960.1.1 | 2e-59 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65230.1 | 1e-51 | myb domain protein 53 |
Publications ? help Back to Top | |||
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