PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000304.1_g00016.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 263aa    MW: 30287.7 Da    PI: 7.7641
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000304.1_g00016.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.9e-161461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g WT+eEd +l+ +v+++G  +W+  +++ g+ R++k+c++rw +yl
  Itr_sc000304.1_g00016.1 14 KGTWTPEEDRKLAAYVTRYGCWNWRQLPKYAGLARCGKSCRLRWMNYL 61
                             799*****************99************************97 PP
2Myb_DNA-binding58.41.6e-1867110146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              rg+ T+eEde++ + ++qlG++ W++Ia++++ gRt++++k++w++
  Itr_sc000304.1_g00016.1  67 RGNYTKEEDEIIMRMHEQLGNK-WSAIAAHLP-GRTDNEIKNHWHT 110
                              899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.509961IPR017930Myb domain
SuperFamilySSF466893.07E-3012108IPR009057Homeodomain-like
SMARTSM007179.8E-101363IPR001005SANT/Myb domain
PfamPF002492.3E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-231568IPR009057Homeodomain-like
CDDcd001671.83E-81661No hitNo description
PROSITE profilePS5129426.49562116IPR017930Myb domain
SMARTSM007174.1E-1766114IPR001005SANT/Myb domain
PfamPF002492.1E-1667110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.8E-2769115IPR009057Homeodomain-like
CDDcd001678.26E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MVRTPCCDKS GFKKGTWTPE EDRKLAAYVT RYGCWNWRQL PKYAGLARCG KSCRLRWMNY  60
LRPNIKRGNY TKEEDEIIMR MHEQLGNKWS AIAAHLPGRT DNEIKNHWHT SLKKNSRQLS  120
SSPAQPKKKS SSSRTKKQDR TNSFPENPII SAHEILESSQ WSPQQSSSEA CSSSPSSSST  180
TTTTTKSDEI IHDDQTVQGE FGHMECDESF WSEPFIMDNL WSKNEFDVPS IDFGLLSPPS  240
PFRDYDYLCS FDHFPEGVNN LNW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-29141147106B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019189955.11e-151PREDICTED: myb-related protein Myb4-like
TrEMBLA0A1J6KFD93e-95A0A1J6KFD9_NICAT; Myb-related protein myb4
STRINGXP_009624516.12e-95(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.13e-56myb domain protein 15