PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000304.1_g00015.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | MYB | ||||||||
Protein Properties | Length: 224aa MW: 25391 Da PI: 5.1542 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49 | 1.4e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd+ l +v ++G +W+ ++ g+ R++k+c++rw +yl Itr_sc000304.1_g00015.1 14 KGAWSKEEDDMLRAYVLKHGHQNWRQLPNLAGLSRCGKSCRLRWVNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 56.7 | 5.4e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg +T +Ed+l+++++kqlG++ W++Ia++++ gR+++++k++w++ Itr_sc000304.1_g00015.1 67 RGHFTRDEDQLILNLHKQLGNK-WSAIAARLP-GRSDNEIKNHWHTC 111 899*******************.*********.***********985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.014 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.21E-31 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.6E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-22 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.40E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.151 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 5.9E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.7E-16 | 67 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-25 | 69 | 114 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.21E-12 | 70 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MVRAPSVDQN GKKKGAWSKE EDDMLRAYVL KHGHQNWRQL PNLAGLSRCG KSCRLRWVNY 60 LKPGIKRGHF TRDEDQLILN LHKQLGNKWS AIAARLPGRS DNEIKNHWHT CLKKFDNVGV 120 IESSKTQSSS HADDDAQSVQ SSDKSQQQHL APFGLQAATE TLPFSPKTEP FSYFMDSAVL 180 SSVEGTSNDD DDDDDDDSRE LLEQEFFIPD FADEEIQSLL NDFP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-25 | 14 | 114 | 7 | 106 | B-MYB |
1h8a_C | 3e-25 | 14 | 114 | 27 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019190032.1 | 1e-138 | PREDICTED: myb-related protein Myb4-like | ||||
TrEMBL | A0A068UTL8 | 1e-62 | A0A068UTL8_COFCA; Uncharacterized protein | ||||
STRING | XP_008342092.1 | 5e-61 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 5e-53 | myb domain protein 15 |