PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000300.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 583aa    MW: 67002.7 Da    PI: 7.3499
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000300.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding223.7e-07475522448
                              S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                              W+  E   lv++v ++G g+W  I r +     +Rt+ ++k++w+++l
  Itr_sc000300.1_g00002.1 475 WSLTEVMNLVQGVSKYGVGRWIQIKRLFFrssPHRTPADLKDKWRNLL 522
                              99999**********************999999*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.789467526IPR017930Myb domain
SuperFamilySSF466892.81E-15470526IPR009057Homeodomain-like
SMARTSM007177.5E-7471524IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-10475523IPR009057Homeodomain-like
CDDcd116604.44E-17475522No hitNo description
PfamPF139214.2E-5475528No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MVDNFGEMCK TEVLFDSQEH NLKPLIENAK VHIEESAPPV GSVFSESEEE GMRLQLLLEE  60
PKYSNILDTV LDINASNAQK NFYVNEYLDS TYHKADDGVL NSSFTEGNKT VEQFLDGLSE  120
ENFSVVSCEE NSHFDACKDY LLDVMFDERA HQSLHSVLNK EIYMDDDTKF DNQKLSSTQQ  180
IENSSPCHFK KTRTWLLPNF NPPDDNSHIG QNMKIQLQIT SAKRSARSSA TRVFKSSLAL  240
SSSSEDSYVP RLEATYSQNN LRVDEMSSDK LRKKSDKWKN NLTLEEFSIP NENKGVEVSS  300
ATKDLLKAPS PFSGVFSFKR KKRVQRVKKK QNNACCESFR NTFFALERNS ECGRKKPEIC  360
KKHTKDNVLH DASKWQHYGE GSRVPLQAGN EHFRGCTEVP RDLPFKDMTT KNEGHECVDH  420
SNKRHEDNCS NVYSDSLVES LEEDDDTYTG ESEDDTSENE WKTEKIQHHR KNHFWSLTEV  480
MNLVQGVSKY GVGRWIQIKR LFFRSSPHRT PADLKDKWRN LLSASCGRSQ KRRVRPRQNG  540
IPHSIPQHIL HWVRDLAAIH PYPRKKVSRT APSIRASNTA PRT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019178421.10.0PREDICTED: uncharacterized protein LOC109173627 isoform X1
RefseqXP_019178429.10.0PREDICTED: uncharacterized protein LOC109173627 isoform X1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA134241214
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-18TRF-like 6