PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000298.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ERF | ||||||||
Protein Properties | Length: 248aa MW: 26943.2 Da PI: 6.5259 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.6 | 4.1e-20 | 109 | 159 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp +ng +r++lg++ taeeAa a+++a+ +++g Itr_sc000298.1_g00001.1 109 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTYETAEEAAIAYDKAAYRMRG 159 7********.***********9987..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.2E-32 | 108 | 168 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.1E-14 | 109 | 159 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.73E-23 | 109 | 169 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.47E-29 | 109 | 168 | No hit | No description |
PROSITE profile | PS51032 | 24.263 | 109 | 167 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-37 | 109 | 173 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.3E-11 | 110 | 121 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.3E-11 | 133 | 149 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MFQPVSAELP AANFPVYHRS SSFSSLMSCL TETWGDLPLK EDDSEDMVIY GVLRDAVSDG 60 WTPFNFTAGE VKAEPWESIE AAVTPACAAP TFVATPAAAP AAARPKGRHY RGVRQRPWGK 120 FAAEIRDPAK NGARVWLGTY ETAEEAAIAY DKAAYRMRGS KALLNFPHRI GSNEPDPVRV 180 TAKRRSPEPE ASSTSSVSEN GSPKRRRKVA AAEQADSDVE SRSNPLPAEC HANILPIGEQ 240 LIVSQLAF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 9e-38 | 106 | 174 | 2 | 70 | ATERF1 |
3gcc_A | 9e-38 | 106 | 174 | 2 | 70 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 202 | 208 | PKRRRKV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by ethylene. {ECO:0000269|PubMed:10945353}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019192076.1 | 1e-141 | PREDICTED: ethylene-responsive transcription factor 2-like | ||||
Swissprot | Q9LW50 | 1e-118 | ERF2_NICSY; Ethylene-responsive transcription factor 2 | ||||
TrEMBL | A0A1U7VHW3 | 1e-115 | A0A1U7VHW3_NICSY; ethylene-responsive transcription factor 2 | ||||
STRING | XP_009765938.1 | 1e-116 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4054 | 22 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17500.1 | 7e-54 | ethylene responsive element binding factor 1 |