PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000295.1_g00011.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GATA
Protein Properties Length: 445aa    MW: 49149 Da    PI: 6.1515
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000295.1_g00011.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA35.31.6e-112149735
                     GATA  7 tkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                             t TplWR+gp  ++ LCnaCG ++r kg+
  Itr_sc000295.1_g00011.1 21 TCTPLWRNGPPEKPVLCNACGSRWRTKGT 49
                             55********88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.3E-4661IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.62E-62054No hitNo description
Gene3DG3DSA:3.30.50.105.9E-82149IPR013088Zinc finger, NHR/GATA-type
PfamPF003203.1E-92149IPR000679Zinc finger, GATA-type
CDDcd002024.78E-112367No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MPLIFAGVEE STSHFFVENI TCTPLWRNGP PEKPVLCNAC GSRWRTKGTL ANYTPLHARI  60
DPDDSENYKI SRVKIVSNRN KEEKVMKRKQ THFYSQVGIP PDYNQGLRKG LDEDTSNRSS  120
SGSAVSNSES CAEFGGTEVS DLTGPTQPNV WDTMVPSRKR TCFTRPKPSP VEKLTKDLYT  180
ILHEQQSLFL SGSSAEDLLL ESDKPMVSVE IGHGSMLIRH PSSIGREEES EASSLSVDNK  240
QLTVNEAYSP LSTPVHNYNK KGAINSQDAG AERVRKPTGL GMELELVKRD KDQFEEFQIL  300
GHLDSPLHYI DLKDAKYKSS SSCYEVAGGP SDVGSVNVKR SRDGLDQKPS QKPSGAKAVM  360
KSPIRVTIKG AYEHKELVET DGICFSPKHL FALPPDNSSL VLDSFGFATE SSDQDLLLDV  420
PSNSSFPQAE LLADSQFRCP SDRNF
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016494465.11e-145PREDICTED: GATA transcription factor 26-like
SwissprotQ8W4H13e-76GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A328E2380.0A0A328E238_9ASTE; Uncharacterized protein
STRINGXP_009626897.11e-144(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20892462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.35e-79GATA transcription factor 26