PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000291.1_g00009.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 335aa    MW: 36680 Da    PI: 10
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000291.1_g00009.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.83.9e-111053344
                             SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
          Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                              W+ e+d+ + +a + ++ +   +W++Ia+ ++ g++lk++k+++
  Itr_sc000291.1_g00009.1 10 VWSRELDKAFENALATYPEDlsdRWEKIAADVP-GKSLKEVKLHY 53
                             7********************************.**********9 PP
2Myb_DNA-binding24.27.6e-081832181247
                              HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding  12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              ++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
  Itr_sc000291.1_g00009.1 183 FLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 218
                              6667889****************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.3E-5759IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-4957IPR009057Homeodomain-like
SuperFamilySSF466893.36E-10965IPR009057Homeodomain-like
PfamPF002491.2E-81053IPR001005SANT/Myb domain
CDDcd001671.35E-71153No hitNo description
PROSITE profilePS500906.5511157IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.8E-6106126IPR009057Homeodomain-like
SMARTSM007170.023177221IPR001005SANT/Myb domain
SuperFamilySSF466894.28E-10180224IPR009057Homeodomain-like
TIGRFAMsTIGR015575.6E-11182221IPR006447Myb domain, plants
CDDcd001679.10E-5182219No hitNo description
PfamPF002499.6E-6183218IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-6186219IPR009057Homeodomain-like
PROSITE profilePS500904.495187219IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MTVTESSSSV WSRELDKAFE NALATYPEDL SDRWEKIAAD VPGKSLKEVK LHYEILMDDV  60
SRIESGCVPL PYYDSSSDSL TSQDDKKGGN SGQGNNDSHH GKSTRSDQER RKGIAWTEEE  120
HRSVRAKSST MWLGRLLDEG WATSPTRRVH FSVSRIKLDA REVNKRGCWS PTVAYWSRGK  180
WLFLLGLDKY GKGDWRSISR NFVVTRTPTQ VASHAQKYFI RLNSMNKDRR RSSIHDITSV  240
NSGDVLSPQG PITGQTNGTT AGSSSGKSNK QPAAHPGVGV YGPTTIGQPV GGPLVSAVGT  300
PVNLPPPAHM AYGVRPPIPG QALPGVPGTY PMPHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-17190189RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00500DAPTransfer from AT5G08520Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755163e-43HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019163833.11e-165PREDICTED: transcription factor DIVARICATA-like isoform X1
SwissprotQ9FNN61e-86SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A2H5P3M61e-137A0A2H5P3M6_CITUN; Uncharacterized protein
STRINGXP_009613368.11e-126(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41492445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.14e-87MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]