PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000286.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | MYB | ||||||||
Protein Properties | Length: 260aa MW: 29473.1 Da PI: 7.5102 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.5 | 1.3e-17 | 12 | 59 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll ++++++G g W+ ++++ g++R++k+c++rw++yl Itr_sc000286.1_g00003.1 12 KGAWTEEEDNLLRKYIEEFGEGKWHQVPAKAGLNRCRKSCRLRWLNYL 59 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 28 | 4.9e-09 | 74 | 106 | 14 | 48 |
HHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 14 davkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 d++ +l + W++Ia +++ gRt++++k++w+++l Itr_sc000286.1_g00003.1 74 DLIIRLHKL-WSLIAGRIP-GRTANDVKNYWNTHL 106 667777777.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.9E-23 | 7 | 62 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.928 | 7 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.85E-23 | 9 | 102 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-15 | 11 | 61 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-16 | 12 | 59 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.30E-11 | 14 | 59 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-16 | 63 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-5 | 64 | 108 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 11.447 | 64 | 110 | IPR017930 | Myb domain |
Pfam | PF00249 | 6.9E-7 | 80 | 106 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MDKTAAKTGM KKGAWTEEED NLLRKYIEEF GEGKWHQVPA KAGLNRCRKS CRLRWLNYLR 60 PNIKRGDFAW DEVDLIIRLH KLWSLIAGRI PGRTANDVKN YWNTHLKKTA EFGMPKPPRR 120 QQENGRGNIV DIGPPPRPPN FSKLSSFLSL GTETTTTTPT TMPDNDVSKR TFTPSPPADS 180 VTQWWENLLA IGERDGAITW SPSLTTSDEG DKAVGDGETW SRVIGDGKST FIEEGEFSWN 240 EFQFPMGTSK WNDGIWDLGE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-15 | 10 | 111 | 5 | 109 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ618030 | 1e-122 | JQ618030.1 Ipomoea nil MYB1 gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019154715.1 | 1e-131 | PREDICTED: transcription factor MYB90-like | ||||
Swissprot | Q9FNV9 | 6e-52 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | M9NV77 | 4e-70 | M9NV77_IPOPU; MYB1 (Fragment) | ||||
STRING | EOY03964 | 2e-66 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 1e-49 | myb domain protein 113 |
Publications ? help Back to Top | |||
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