PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000285.1_g00018.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 255aa    MW: 28647.4 Da    PI: 9.5025
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000285.1_g00018.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.73.6e-15956148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+W++eEd +lv ++ ++G  +W+  +r+ g+ Rt+k+c++rw +yl
  Itr_sc000285.1_g00018.1  9 KGPWSPEEDRKLVSYIMRYGIWNWRQMPRYAGLARTGKSCRLRWVNYL 56
                             79******************99************************97 PP
2Myb_DNA-binding38.33e-1262107148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              rg++  eE  +l++  + lG++ W++Ia+ ++ gRt++++k++++++l
  Itr_sc000285.1_g00018.1  62 RGPFDMEEVAILIHHYQSLGNK-WSAIAAQLP-GRTDNDIKNFFHTHL 107
                              899999****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.514456IPR017930Myb domain
SuperFamilySSF466895.85E-287103IPR009057Homeodomain-like
SMARTSM007174.5E-11858IPR001005SANT/Myb domain
PfamPF002492.9E-13956IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-211063IPR009057Homeodomain-like
CDDcd001672.18E-101156No hitNo description
PROSITE profilePS5129420.0357111IPR017930Myb domain
SMARTSM007171.2E-1061109IPR001005SANT/Myb domain
PfamPF002498.3E-1162107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-2264110IPR009057Homeodomain-like
CDDcd001674.73E-868107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MEPAAALKKG PWSPEEDRKL VSYIMRYGIW NWRQMPRYAG LARTGKSCRL RWVNYLSPDV  60
RRGPFDMEEV AILIHHYQSL GNKWSAIAAQ LPGRTDNDIK NFFHTHLKKL LKINNAAAPS  120
RPKPSIRSKR LISQTVATNL INNTVAAAAP PPPPPESPDS WNSEIYQVSD NNINFSETPQ  180
VNNNDNNNNM MTMRSSSQVV ILESSPNSFA PPLSGEARFY TAAAPVDMKM NISPSSDVDA  240
TADFWYNMLA EAERL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-2471095106B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019191741.11e-134PREDICTED: myb-related protein Myb4-like
TrEMBLA0A3Q7FLR41e-60A0A3Q7FLR4_SOLLC; Uncharacterized protein
STRINGSolyc03g093890.2.12e-61(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.13e-49myb domain protein 15