PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000285.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ERF | ||||||||
Protein Properties | Length: 255aa MW: 28959.6 Da PI: 7.8539 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.4 | 1.3e-16 | 170 | 219 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+++AeIrdp k r++lg+++ + +Aa+a++ a+ k++g Itr_sc000285.1_g00002.1 170 YRGVRRRP-WGKYAAEIRDP---DrKGCRIWLGTYDNEVDAARAYDCAAFKMRG 219 9*******.**********8...3245**********99*************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 3.8E-33 | 169 | 233 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.551 | 169 | 227 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.35E-22 | 169 | 229 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.5E-30 | 169 | 228 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.8E-11 | 170 | 219 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-13 | 170 | 181 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.31E-23 | 177 | 227 | No hit | No description |
PRINTS | PR00367 | 3.0E-13 | 209 | 229 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MMMATQDEGT TLELIRQHLL GDFATSTATT SDAFIDNLNF CFPDNNLFTN PQIATDFSTE 60 FVPLQFTDQD FFSGTNFFSI KFEFSNSDLN ELNQPDLPSV PCFNPHLNFP QFYETKPDIF 120 EDKMSSVKEP QTPPAPNPIA TEHVPWISGG RREYGSGFTC VNRTGKGRYY RGVRRRPWGK 180 YAAEIRDPDR KGCRIWLGTY DNEVDAARAY DCAAFKMRGS KAILNFPMDA GKALPPAKVN 240 RKRRKESKSK MAVKD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-26 | 166 | 228 | 2 | 64 | ATERF1 |
3gcc_A | 2e-26 | 166 | 228 | 2 | 64 | ATERF1 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 240 | 245 | RKRRKE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019192675.1 | 1e-136 | PREDICTED: ethylene-responsive transcription factor 5-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07580.1 | 2e-31 | ERF family protein |