PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000283.1_g00018.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NAC

Protein Properties

Length: 393aa MW: 43440 Da PI: 7.4944

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000283.1_g00018.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.5	4.4e-52	17	144	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 + pGfrFhPtdeelv +yLkkkv++k+l++ e ik++diyk++PwdLpk ++ +ekewyf+++rd+ky+++ r+nr+t +g+Wkat Itr_sc000283.1_g00018.1 17 MLPGFRFHPTDEELVGFYLKKKVQHKPLSI-ELIKQLDIYKYDPWDLPKLAAVGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKAT 101 579*************************.89***********8778899*************************** PP NAM 87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 g+d++++s+ +++ +glkk+Lvfykgra +g ktdW+mhe+rl Itr_sc000283.1_g00018.1 102 GTDRPIYSSeTSKCIGLKKSLVFYKGRAARGIKTDWMMHEFRL 144 ***9866777*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-57	13	175	IPR003441	NAC domain
PROSITE profile	PS51005	56.704	17	175	IPR003441	NAC domain
Pfam	PF02365	1.9E-25	19	144	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009733	Biological Process	response to auxin
GO:0045770	Biological Process	positive regulation of asymmetric cell division
GO:0048103	Biological Process	somatic stem cell division
GO:0048829	Biological Process	root cap development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MDGRSSDQTE KIMDEVMLPG FRFHPTDEEL VGFYLKKKVQ HKPLSIELIK QLDIYKYDPW 60 DLPKLAAVGE KEWYFYCPRD RKYRNSARPN RVTGAGFWKA TGTDRPIYSS ETSKCIGLKK 120 SLVFYKGRAA RGIKTDWMMH EFRLPSISDI STPKRCLDKN IPPNDAWAIC RIFKKANSNA 180 QRALSHSWVV SSSPPTIPQT PTTTTTQQTL LTQNPNNLNQ VSMTTHDFKN SPEIMGLDLL 240 PYNDPSTSYT FPPSLFTHPH MPLQKPTIND ASSLLLDMSN SVFGEFVGKG SGESTVDYGG 300 LINDGFSVVG PENAVEGSLQ DGGSGGGGGA VVVVGPGKES SNIIDESIRF SFNGFPLNMG 360 AENAWKLSSL VWESSPCPSE ISSTSYSTSK CYT

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MDGRSSDQTE KIMDEVMLPG FRFHPTDEEL VGFYLKKKVQ HKPLSIELIK QLDIYKYDPW  60
DLPKLAAVGE KEWYFYCPRD RKYRNSARPN RVTGAGFWKA TGTDRPIYSS ETSKCIGLKK  120
SLVFYKGRAA RGIKTDWMMH EFRLPSISDI STPKRCLDKN IPPNDAWAIC RIFKKANSNA  180
QRALSHSWVV SSSPPTIPQT PTTTTTQQTL LTQNPNNLNQ VSMTTHDFKN SPEIMGLDLL  240
PYNDPSTSYT FPPSLFTHPH MPLQKPTIND ASSLLLDMSN SVFGEFVGKG SGESTVDYGG  300
LINDGFSVVG PENAVEGSLQ DGGSGGGGGA VVVVGPGKES SNIIDESIRF SFNGFPLNMG  360
AENAWKLSSL VWESSPCPSE ISSTSYSTSK CYT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-52	8	182	8	171	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-52	8	182	8	171	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-52	8	182	8	171	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-52	8	182	8	171	NO APICAL MERISTEM PROTEIN
3swm_A	5e-52	8	182	11	174	NAC domain-containing protein 19
3swm_B	5e-52	8	182	11	174	NAC domain-containing protein 19
3swm_C	5e-52	8	182	11	174	NAC domain-containing protein 19
3swm_D	5e-52	8	182	11	174	NAC domain-containing protein 19
3swp_A	5e-52	8	182	11	174	NAC domain-containing protein 19
3swp_B	5e-52	8	182	11	174	NAC domain-containing protein 19
3swp_C	5e-52	8	182	11	174	NAC domain-containing protein 19
3swp_D	5e-52	8	182	11	174	NAC domain-containing protein 19
4dul_A	4e-52	8	182	8	171	NAC domain-containing protein 19
4dul_B	4e-52	8	182	8	171	NAC domain-containing protein 19
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	151	155	TPKRC

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019170622.1	0.0	PREDICTED: putative NAC domain-containing protein 94
Swissprot	Q9ZVH0	1e-103	FEZ_ARATH; Protein FEZ
TrEMBL	A0A1S3YUB9	1e-139	A0A1S3YUB9_TOBAC; protein FEZ-like isoform X2
STRING	PGSC0003DMT400080307	1e-138	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2202	22	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-103	NAC family protein

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]