PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000283.1_g00010.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 508aa    MW: 54883.7 Da    PI: 7.2433
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000283.1_g00010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.35.4e-16161206147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              rg W + Ed +l+++v+ +G+ +W++Ia+++  gR++k+c++rw++ 
  Itr_sc000283.1_g00010.1 161 RGHWRPAEDAKLKELVAIYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 206
                              899*****************************.***********996 PP
2Myb_DNA-binding54.42.8e-17213256146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              r ++++eE+e+l  a++++G++ W+ Iar ++ gRt++ +k++w+ 
  Itr_sc000283.1_g00010.1 213 RRAFSEEEEERLMAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 256
                              678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.413156207IPR017930Myb domain
SMARTSM007172.4E-14160209IPR001005SANT/Myb domain
SuperFamilySSF466891.92E-27161254IPR009057Homeodomain-like
PfamPF002492.0E-15161206IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-25162214IPR009057Homeodomain-like
CDDcd001673.84E-13164205No hitNo description
PROSITE profilePS5129426.846208262IPR017930Myb domain
SMARTSM007174.4E-14212260IPR001005SANT/Myb domain
PfamPF002497.6E-14213255IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-20215261IPR009057Homeodomain-like
CDDcd001673.60E-11215255No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MASNRCIYPP PNYSPSPSSS SSSSSPFGAS MGMVFADMGS LSIDPKNGGT QILQEASLPK  60
NTEIGGGEGR GCWGFPSFLK GGLEDHHHHH QNQNNSDGDE GGKGSDCSDG FGENSEPIID  120
LNAAVLSGED HHHHHHQPIM HVGGNNGKEA ESTGQSKLCA RGHWRPAEDA KLKELVAIYG  180
PQNWNLIAEK LEGRSGKSCR LRWFNQLDPR INRRAFSEEE EERLMAAHRL YGNKWAMIAR  240
LFPGRTDNAV KNHWHVIMAR KYREQSSAYR RRKMGQLVYR RMEEDDEIAT PNNGGGGGGA  300
AAARDHGGNS GGGGSGGSVM RTTSIGPISS TQFGGVGGNN NGGWMVYGGA NGSPHMVASS  360
EAIPTNNGHH HHHHPPPPFS ALCAPQQPPF DPFPGQCTNQ MVGMLNQGRC WGKPHHHHHH  420
DHHHILGHHP PPPPPPLMMT PMQQQQQQYY NFPYSISPDF SSRLPPQPEP HPPPPAAGGD  480
DRKGGGTSST TCDAISPPFI DFLGVGAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-321612617107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019170626.10.0PREDICTED: uncharacterized protein LOC109166180
RefseqXP_019170627.10.0PREDICTED: uncharacterized protein LOC109166180
TrEMBLA0A484N4721e-148A0A484N472_9ASTE; Uncharacterized protein
STRINGXP_009781411.11e-128(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16842470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.12e-75myb domain protein 105