PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000281.1_g00021.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 486aa    MW: 52731 Da    PI: 7.7129
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000281.1_g00021.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.62.9e-18139185148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              +g WT+eEd ll+++v+q+G ++W+ Ia ++  gR +kqc++rw+++l
  Itr_sc000281.1_g00021.1 139 KGQWTEEEDRLLIRLVNQYGDRRWSVIATKIV-GRAGKQCRERWHNHL 185
                              799*****************************.*************97 PP
2Myb_DNA-binding57.53.2e-18191233145
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                              + +W++eE+ llv++++qlG++ W+ Ia+ ++ gR+++++k++w+
  Itr_sc000281.1_g00021.1 191 KESWSEEEERLLVEVHEQLGNR-WSEIAKQIP-GRSENSIKNHWN 233
                              578*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.171134189IPR017930Myb domain
SuperFamilySSF466896.83E-30137232IPR009057Homeodomain-like
SMARTSM007176.1E-17138187IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-27140193IPR009057Homeodomain-like
PfamPF139217.4E-19142202No hitNo description
CDDcd001672.83E-16142185No hitNo description
PROSITE profilePS5129421.276190240IPR017930Myb domain
SMARTSM007174.0E-17190238IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-21194238IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MDRGGGGGGG SGGYRPFAVN FQNPILPPFP PVIVPQRNDH QEIPFPESFG SSSSSFHGGA  60
SSSNGLLPAD AAAAAAASWL SHLPNLNNFG SRGGFPHGLV PAPAPASWAH HNPENAYPQE  120
TRREKEHERR PSNGVAFIKG QWTEEEDRLL IRLVNQYGDR RWSVIATKIV GRAGKQCRER  180
WHNHLRPDIK KESWSEEEER LLVEVHEQLG NRWSEIAKQI PGRSENSIKN HWNATKRRQF  240
SKRRLKSSLQ DAGSSGSGRR RKSVILQNYI KYKYFSGLTL GPPGTLVAEH PSIQQQVNNG  300
GSPAPAPAPP QAAAAEAAEE QDNRDSPSIL TETYDEEVNF MQKLFGNSSS SSSTAANNGS  360
RSNNSSAEFV AVGRKTNEDS VAAEEDSWST YLASDPNLYE MGGADQIINS TPLAPAAANN  420
SNPGAANSHR GAPPAATMNR WCSSATAAAA MDMDFMDFVS ASSSSHYCTC PHGYGSFCTK  480
TPRQMF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C8e-4611523934158MYB PROTO-ONCOGENE PROTEIN
1h89_C8e-4611523934158MYB PROTO-ONCOGENE PROTEIN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241261KRRLKSSLQDAGSSGSGRRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019178330.10.0PREDICTED: myb-related protein B-like
TrEMBLA0A328DBS52e-94A0A328DBS5_9ASTE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48251941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.15e-46myb domain protein 119