PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000280.1_g00006.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 623aa MW: 71792.4 Da PI: 9.0061

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000280.1_g00006.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	54.6	3.6e-17	24	110	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 +fY +YAk+ GF v++++sk+ ++g+ + tf C k ++e+++k+ +++ +t+t C+ak++ k+ +d+ +++t++el H Itr_sc000280.1_g00006.1 24 EFYTNYAKKKGFGVVTRSSKRG-DDGNLKYFTFACAKAHNKESTSKN---LLSSKLSTKTRCQAKIRFKRCEDESFKITTVELSHD 105 6************9998887.8999******9999998888...88999*************************** PP FAR1 87 Helap 91 H+l+p Itr_sc000280.1_g00006.1 106 HDLSP 110 986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.2E-15	24	110	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.0E-39	230	323	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 623 aa Download sequence Send to blast
MEDRERLNEP KVDMVFQSKE EVREFYTNYA KKKGFGVVTR SSKRGDDGNL KYFTFACAKA 60 HNKESTSKNL LSSKLSTKTR CQAKIRFKRC EDESFKITTV ELSHDHDLSP GKARHLRCHR 120 KLNEQVKRRL DINDQAGIAP NKNFRSLVVD AGGYENVTFN EMDCRNYIDE LRRKRLGVGD 180 AEAVCKYFAK MQQSDPNFFY VMDVGEDSRL RNLFWADGRS KAAYESFADV ITFDTTYLTN 240 KYDMPFAPFV GVNHHGQSVL FGCGLLSTED TNSFVWLFQS WLNCMSGRHP KAIITDQCKA 300 MQNAIAIVFP NTKHRWCLWH IMKXIKEALQ SVVYDSLNEN EFENGWSLLI ETYDLNENDW 360 GILCRHALLV LILRKVSEIP SRYILSRWRK DLKRGYTCIR SSYNLSCKET QRCEQMCDAF 420 REVAIIAASE DEKYKRVMDG IKELKSSVMN DEVINSTTQA SCLPQDNGVD KQNMSSGANK 480 VLSPLVTRRK GRPPTKRRVS RLEQMVESLK MKKKRKQIEE KDPKKSRQRQ SSISYDDIDC 540 VPISSSPHKV DEMGTQESFV TTNPMMPLQG FYMVPQQHNV IPTSLDGGHY IPYSSPSNNQ 600 LNSDIQLQAQ VHFNQVWRGV YGT

Sequence ? help Back to Top

Protein Sequence Length: 623 aa Download sequence Send to blast

MEDRERLNEP KVDMVFQSKE EVREFYTNYA KKKGFGVVTR SSKRGDDGNL KYFTFACAKA  60
HNKESTSKNL LSSKLSTKTR CQAKIRFKRC EDESFKITTV ELSHDHDLSP GKARHLRCHR  120
KLNEQVKRRL DINDQAGIAP NKNFRSLVVD AGGYENVTFN EMDCRNYIDE LRRKRLGVGD  180
AEAVCKYFAK MQQSDPNFFY VMDVGEDSRL RNLFWADGRS KAAYESFADV ITFDTTYLTN  240
KYDMPFAPFV GVNHHGQSVL FGCGLLSTED TNSFVWLFQS WLNCMSGRHP KAIITDQCKA  300
MQNAIAIVFP NTKHRWCLWH IMKXIKEALQ SVVYDSLNEN EFENGWSLLI ETYDLNENDW  360
GILCRHALLV LILRKVSEIP SRYILSRWRK DLKRGYTCIR SSYNLSCKET QRCEQMCDAF  420
REVAIIAASE DEKYKRVMDG IKELKSSVMN DEVINSTTQA SCLPQDNGVD KQNMSSGANK  480
VLSPLVTRRK GRPPTKRRVS RLEQMVESLK MKKKRKQIEE KDPKKSRQRQ SSISYDDIDC  540
VPISSSPHKV DEMGTQESFV TTNPMMPLQG FYMVPQQHNV IPTSLDGGHY IPYSSPSNNQ  600
LNSDIQLQAQ VHFNQVWRGV YGT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	495	515	KRRVSRLEQMVESLKMKKKRK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028058369.1	1e-155	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A1R3I092	0.0	A0A1R3I092_COCAP; Uncharacterized protein
STRING	Traes_1AS_F08B3720F.2	1e-150	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1301	9	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-70	FAR1-related sequence 5