PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000275.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 280aa    MW: 30954.4 Da    PI: 9.2363
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000275.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.4e-1975123355
                      AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ ++k++g
  Itr_sc000275.1_g00003.1  75 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREARKIRG 123
                              9*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.9E-3874137IPR001471AP2/ERF domain
PROSITE profilePS5103223.94774131IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-3274132IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-2274132IPR016177DNA-binding domain
PfamPF008479.6E-1275123IPR001471AP2/ERF domain
CDDcd000181.17E-3275133No hitNo description
PRINTSPR003676.9E-127586IPR001471AP2/ERF domain
PRINTSPR003676.9E-1297113IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MCGGAFLFDR KFPRDGGRSV SSGDIWPEFC PTSQTTAKSS FSGQPESVAT PKRSQPCTGD  60
GSPEKAKKRQ RKNMYRGIRQ RPWGKWAAEI RDPRKGVRVW LGTFNTAEEA ARAYDREARK  120
IRGKKAKVNF PNDDTNFNPP AQPEYRRNPP DKSIGKADLN AEPYYPRSNS MINAGNLIGF  180
ASPSGSENGN EGLLKEKRAG GEEVKVNDGA EIKEAENQVR KLSEELMVYE SYMKFYEIPY  240
LDGQSTAAQV NPVPDTVVGG GSIDLWSFDD VSPSSVVNSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2175131663ATERF1
3gcc_A3e-2175131663ATERF1
5wx9_A3e-21751331574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019197346.11e-164PREDICTED: ethylene-responsive transcription factor ERF071-like
TrEMBLT1WZI32e-84T1WZI3_CAPCH; Ethylene responsive factor
STRINGXP_009608570.12e-82(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA71182329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.15e-28ethylene-responsive element binding protein