PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000271.1_g00080.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 225aa    MW: 24512.8 Da    PI: 5.1851
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000271.1_g00080.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.8e-1856105355
                      AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              y+GVr ++ +g+++AeIrd  ++ ++ r++lg+f+taeeAa  +++a+ +l+g
  Itr_sc000271.1_g00080.1  56 YRGVRKRP-WGKYAAEIRDS-TR-RSVRVWLGTFDTAEEAALVYDQAAFALHG 105
                              9*******.**********3.22.25*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.1E-3455119IPR001471AP2/ERF domain
PROSITE profilePS5103222.87955113IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-2255115IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.4E-2956114IPR001471AP2/ERF domain
CDDcd000182.45E-2756114No hitNo description
PfamPF008477.3E-1356105IPR001471AP2/ERF domain
PRINTSPR003671.0E-105667IPR001471AP2/ERF domain
PRINTSPR003671.0E-107995IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MLLYTVLAEA GGGGGGAISS SSSSSSFLGG GPAEEEEEEE EWSSFSRTTI GGGGAYRGVR  60
KRPWGKYAAE IRDSTRRSVR VWLGTFDTAE EAALVYDQAA FALHGSTAVL NFPAEVVYQS  120
LVELGCGFDD GGSPVLALKR RHCKNSRRSS SMMNKKRINN NNNNNNNNNN NNNNNNNNNN  180
NALKKKKEDD EFKGERVHGE VLVLEDLGAE YLEQLLSISE AKLDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-27541151374Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2296431e-32KP229643.1 UNVERIFIED: Boehmeria nivea AP2/ERF domain-containing protein-like (ERF20) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019191842.15e-87PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotA0A3Q7I5Y92e-46ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A251NZY38e-59A0A251NZY3_PRUPE; Uncharacterized protein
TrEMBLM5W2C01e-58M5W2C0_PRUPE; Uncharacterized protein
STRINGEMJ074862e-59(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.15e-41ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]