PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000271.1_g00010.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRF
Protein Properties Length: 413aa    MW: 45892.5 Da    PI: 8.835
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000271.1_g00010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.85.4e-2578122145
                      WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                              d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e 
  Itr_sc000271.1_g00010.1  78 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEV 122
                              79****************************************985 PP
2QLQ575.8e-201145236
                      QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                             +FTa Q+q+L++Q+l+yKy+++++PvPp+Ll  i+
  Itr_sc000271.1_g00010.1 11 PFTAIQWQELEHQALIYKYMVSGMPVPPDLLYSIR 45
                             8******************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.5E-101046IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.0011146IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.3E-151144IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.32578122IPR014977WRC domain
PfamPF088794.0E-2179121IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MMSGGRSSRL PFTAIQWQEL EHQALIYKYM VSGMPVPPDL LYSIRRSLDS SLSSKLLLHQ  60
PQHYGWNYFQ MGFGKKIDPE PGRCRRTDGK KWRCSKEAYP DSKYCERHMH RGRNRSRKPV  120
EVSTAAAVQA TTPQKAIPFS PITTTTSGGC GGGGGGGLSP TTPTSLPFSY LSAAATQPSS  180
ESHHPFLYPF PSSAARPEDH TANFLLDSGA YSRNGYGHGM KEEVDEHVFF SSETSRAMRS  240
ASGSLDDTSW QVAPLTMASP TLAQLKQHKT TYVSANPQQF HEGLAAGSDG KNTDSMHHMK  300
LGSSEEHHQP KKVMHHFFDE WPQETKHSWL DDSGDKYSTH GPLFKTHLSI SIPNSPHDFF  360
MTHNGKSPLL TINHQSLYHG LVGYMVKQRG GERVVVWGAF TAPASLYMCN EVF
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754461e-49HG975446.1 Solanum pennellii chromosome ch07, complete genome.
GenBankHG9755191e-49HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019191664.10.0PREDICTED: growth-regulating factor 1-like
TrEMBLA0A484LXQ91e-126A0A484LXQ9_9ASTE; Uncharacterized protein
STRINGXP_009767378.11e-126(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7432384
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.18e-47growth-regulating factor 5