PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000270.1_g00045.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | GRAS | ||||||||
Protein Properties | Length: 654aa MW: 70926.8 Da PI: 6.337 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 330.8 | 2.7e-101 | 288 | 654 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 +++ e+A+a+++g++e a ++L+rl + a+ +g++ qRl+ay+t AL++r++ + p+se + ++e+ +++ ++e+s Itr_sc000270.1_g00045.1 288 QTISEAATAIAEGKNEVAAEILTRLAQVANVNGSAEQRLTAYMTSALRSRVSP----VEYPPPVSELH---TKEHELSTQKLYEAS 366 67889***********************************************9....44334444444...7788888899***** PP GRAS 89 PilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAee 171 P++k+++++aN aIl+av+ + ++H+iDfdi++G+Q++ Ll aLa+R+ e+p l+iT++++ +g ++l++++e L+k A++ Itr_sc000270.1_g00045.1 367 PCFKLGFMAANLAILDAVSDQrfCKLHVIDFDIGEGGQYLHLLYALAARKaENPTVLKITTFAD-VHGGDQQLRAVEEELQKQAQT 451 ********************966678***********************9566669********.77899**************** PP GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerf 257 gv +++n++ + ++l+ e+L+v+ +Eal+Vn++++l++l+desv++e++rde+L+ vk lsPkvv+vveqe++ n+++F++r+ Itr_sc000270.1_g00045.1 452 AGVCLSINII-PCSNTELSRERLSVDLDEALVVNFAFNLYKLPDESVTTENRRDELLRRVKALSPKVVTVVEQELNGNTAPFVARV 536 *********6.55567789******************************************************************* PP GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343 ea+ yy alfdsl+ ++ +e+ r+ +E+ lgr+ n vaceg++r+er+e l+kWr+rl++aGF+++p+s+++a++ ++ l+ Itr_sc000270.1_g00045.1 537 NEACGYYGALFDSLDRTVLPENIYRVRIEEG-LGRKMGNSVACEGRDRVERCEVLGKWRARLSMAGFTAIPMSQHVADSLRSKLNS 621 *******************************.****************************************************99 PP GRAS 344 vk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374 + + g+++ e+ g + +gWk+r+L ++SaWr Itr_sc000270.1_g00045.1 622 GPrgNPGFTISEQAGGIGFGWKGRTLAVASAWR 654 8877889*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 44.592 | 260 | 632 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.2E-99 | 288 | 654 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm |
Sequence ? help Back to Top |
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Protein Sequence Length: 654 aa Download sequence Send to blast |
MSSGFPGSVQ EFYGGPDGIS NGRSVPVGSN IGNLMQQGGV QVQVPYGSQL PGIVSDSASQ 60 IAHRRSDLIG KRSLVEFQQQ QQQLQFLQQQ RQGALGLYLR NVKPRTYQHS SPISPLSPVD 120 LSALSSISSN SNSPAMNARY GVPILQQFRP QLSMPAGSVN INGVLPSGPG NPNYAPGFSF 180 PNSVQNRGGL GSERAGLETE KKMMNRLQEL EKQLLDDIDE EEGDTVSAVT NSEWSETIQS 240 LISPAQTQTQ TQGPNQNNNK PQISPSPTSS TSSCASSMEC PAITCPKQTI SEAATAIAEG 300 KNEVAAEILT RLAQVANVNG SAEQRLTAYM TSALRSRVSP VEYPPPVSEL HTKEHELSTQ 360 KLYEASPCFK LGFMAANLAI LDAVSDQRFC KLHVIDFDIG EGGQYLHLLY ALAARKAENP 420 TVLKITTFAD VHGGDQQLRA VEEELQKQAQ TAGVCLSINI IPCSNTELSR ERLSVDLDEA 480 LVVNFAFNLY KLPDESVTTE NRRDELLRRV KALSPKVVTV VEQELNGNTA PFVARVNEAC 540 GYYGALFDSL DRTVLPENIY RVRIEEGLGR KMGNSVACEG RDRVERCEVL GKWRARLSMA 600 GFTAIPMSQH VADSLRSKLN SGPRGNPGFT ISEQAGGIGF GWKGRTLAVA SAWR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 5e-37 | 304 | 654 | 21 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019149665.1 | 0.0 | PREDICTED: scarecrow-like protein 8 | ||||
TrEMBL | A0A484L8G2 | 0.0 | A0A484L8G2_9ASTE; Uncharacterized protein | ||||
STRING | PGSC0003DMT400026240 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4023 | 24 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52510.1 | 1e-134 | SCARECROW-like 8 |