PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000270.1_g00045.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 654aa    MW: 70926.8 Da    PI: 6.337
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000270.1_g00045.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS330.82.7e-1012886543374
                     GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                              +++ e+A+a+++g++e a ++L+rl + a+ +g++ qRl+ay+t AL++r++     +    p+se +   ++e+  +++ ++e+s
  Itr_sc000270.1_g00045.1 288 QTISEAATAIAEGKNEVAAEILTRLAQVANVNGSAEQRLTAYMTSALRSRVSP----VEYPPPVSELH---TKEHELSTQKLYEAS 366
                              67889***********************************************9....44334444444...7788888899***** PP

                     GRAS  89 PilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAee 171
                              P++k+++++aN aIl+av+ +   ++H+iDfdi++G+Q++ Ll aLa+R+ e+p  l+iT++++  +g  ++l++++e L+k A++
  Itr_sc000270.1_g00045.1 367 PCFKLGFMAANLAILDAVSDQrfCKLHVIDFDIGEGGQYLHLLYALAARKaENPTVLKITTFAD-VHGGDQQLRAVEEELQKQAQT 451
                              ********************966678***********************9566669********.77899**************** PP

                     GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerf 257
                               gv +++n++   + ++l+ e+L+v+ +Eal+Vn++++l++l+desv++e++rde+L+ vk lsPkvv+vveqe++ n+++F++r+
  Itr_sc000270.1_g00045.1 452 AGVCLSINII-PCSNTELSRERLSVDLDEALVVNFAFNLYKLPDESVTTENRRDELLRRVKALSPKVVTVVEQELNGNTAPFVARV 536
                              *********6.55567789******************************************************************* PP

                     GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343
                               ea+ yy alfdsl+ ++ +e+  r+ +E+  lgr+  n vaceg++r+er+e l+kWr+rl++aGF+++p+s+++a++ ++ l+ 
  Itr_sc000270.1_g00045.1 537 NEACGYYGALFDSLDRTVLPENIYRVRIEEG-LGRKMGNSVACEGRDRVERCEVLGKWRARLSMAGFTAIPMSQHVADSLRSKLNS 621
                              *******************************.****************************************************99 PP

                     GRAS 344 vk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                               +  + g+++ e+ g + +gWk+r+L ++SaWr
  Itr_sc000270.1_g00045.1 622 GPrgNPGFTISEQAGGIGFGWKGRTLAVASAWR 654
                              8877889*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.592260632IPR005202Transcription factor GRAS
PfamPF035149.2E-99288654IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MSSGFPGSVQ EFYGGPDGIS NGRSVPVGSN IGNLMQQGGV QVQVPYGSQL PGIVSDSASQ  60
IAHRRSDLIG KRSLVEFQQQ QQQLQFLQQQ RQGALGLYLR NVKPRTYQHS SPISPLSPVD  120
LSALSSISSN SNSPAMNARY GVPILQQFRP QLSMPAGSVN INGVLPSGPG NPNYAPGFSF  180
PNSVQNRGGL GSERAGLETE KKMMNRLQEL EKQLLDDIDE EEGDTVSAVT NSEWSETIQS  240
LISPAQTQTQ TQGPNQNNNK PQISPSPTSS TSSCASSMEC PAITCPKQTI SEAATAIAEG  300
KNEVAAEILT RLAQVANVNG SAEQRLTAYM TSALRSRVSP VEYPPPVSEL HTKEHELSTQ  360
KLYEASPCFK LGFMAANLAI LDAVSDQRFC KLHVIDFDIG EGGQYLHLLY ALAARKAENP  420
TVLKITTFAD VHGGDQQLRA VEEELQKQAQ TAGVCLSINI IPCSNTELSR ERLSVDLDEA  480
LVVNFAFNLY KLPDESVTTE NRRDELLRRV KALSPKVVTV VEQELNGNTA PFVARVNEAC  540
GYYGALFDSL DRTVLPENIY RVRIEEGLGR KMGNSVACEG RDRVERCEVL GKWRARLSMA  600
GFTAIPMSQH VADSLRSKLN SGPRGNPGFT ISEQAGGIGF GWKGRTLAVA SAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-3730465421375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019149665.10.0PREDICTED: scarecrow-like protein 8
TrEMBLA0A484L8G20.0A0A484L8G2_9ASTE; Uncharacterized protein
STRINGPGSC0003DMT4000262400.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40232443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-134SCARECROW-like 8