PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000270.1_g00019.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 361aa    MW: 40109.3 Da    PI: 4.5252
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000270.1_g00019.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.8e-19122171255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              +++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ kl+g
  Itr_sc000270.1_g00019.1 122 KFRGVRQRP-WGKWAAEIRDPA----RrVRLWLGTYDTAEEAAMVYDNAAIKLRG 171
                              89*******.**********82....35*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.2E-29121178IPR001471AP2/ERF domain
CDDcd000181.36E-32122178No hitNo description
PfamPF008479.6E-13122171IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-21122178IPR016177DNA-binding domain
PROSITE profilePS5103223.657122179IPR001471AP2/ERF domain
SMARTSM003802.1E-37122185IPR001471AP2/ERF domain
PRINTSPR003674.0E-10123134IPR001471AP2/ERF domain
PRINTSPR003674.0E-10145161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MDQSMFCPIK YTEHRNVVKQ LLKPCAAAAV KPGKLPEGPR KVRVTVTDPD ATDSSSDEEE  60
ELFGRQRVKR YIHEIHIERA GKLGVDGNGR NGKKKTAAEG VHARQKAVKN KEVPVSSGAV  120
RKFRGVRQRP WGKWAAEIRD PARRVRLWLG TYDTAEEAAM VYDNAAIKLR GPDALTNFIA  180
PPAKDSPEIL ANATSNSGYD SADESRNLSS PTSVLRFRSS QSSEESEPPV PDYMETDQTG  240
ELSPAKTEFC HYATPPENQE CHGETTVIPD YTHEYLPTDI PFIDNFFDYQ SLEQTLFDDS  300
PSSGFIEDVA VNQFANDFFS DDFGVFNDTT SFEDLGTLDV NVDDYFQDCG DFSGIDAVLA  360
V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-20121178159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019149741.10.0PREDICTED: ethylene-responsive transcription factor CRF4-like
TrEMBLA0A314L4X81e-138A0A314L4X8_NICAT; Ethylene-responsive transcription factor crf4
STRINGXP_009596437.11e-135(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.18e-57cytokinin response factor 4