PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000268.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 876aa    MW: 97830.5 Da    PI: 5.735
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000268.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS386.62.9e-1185038731374
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                              l++lL+ cAeav ++d ++a+++L++l++++s++gd mqRla+yf+ +L+ar+a+s++++ykal +++ts    ++ l+a++lf  
  Itr_sc000268.1_g00002.1 503 LRTLLTLCAEAVVADDRRNASEFLKQLRQHSSQTGDGMQRLAHYFADGLEARMAGSGTQIYKALITKPTS---AADILKAYQLFLA 585
                              5789****************************************************************99...9************ PP

                     GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAe 170
                              ++P+ k+s++  N++ ++ +++++ vH+iDf+i +G+QWp+++q L+sR++gpp+lRiTg++ p++g   +e++eetg+rLa++Ae
  Itr_sc000268.1_g00002.1 586 ICPFRKISNFFSNKTTMNLAQSATSVHVIDFGILYGFQWPCFIQRLSSRKGGPPRLRITGIDLPQPGfrPAERVEETGKRLANYAE 671
                              ******************************************************************9******************* PP

                     GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256
                              +++vpfefn+ +ak++e++++e++++++gE+l+Vn+ ++l +llde+v ++s+rd vLkl+++l+P+v++    +  +ns+ F +r
  Itr_sc000268.1_g00002.1 672 RFNVPFEFNA-IAKKWETIKVEDIKINKGEVLVVNCLFRLRNLLDETVVVNSPRDIVLKLIRELNPHVFIQGIVNGAYNSPFFITR 756
                              **********.7************************************************************************** PP

                     GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                              f eal ++s+lfd+l++++pr+ +eri +E+ ++g+e++nv+ace+aer+er et+++W+ r ++aGF p+pl+++++k  +   +
  Itr_sc000268.1_g00002.1 757 FREALFHFSSLFDMLDTNVPRNIHERILIEKTIFGQEAKNVIACETAERVERPETYKQWHVRNMRAGFLPLPLNKEIMKMSRDRAK 842
                              ************************************************************************************99 PP

                     GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                               +++d + ++e+ ++l++gWk+r ++++S+Wr
  Itr_sc000268.1_g00002.1 843 VYNKD-FVIDEDGEWLLQGWKGRIVYALSSWR 873
                              99966.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.28477854IPR005202Transcription factor GRAS
PfamPF035141.0E-115503873IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 876 aa     Download sequence    Send to blast
MVMERNVRVI CEASGDKLKG QTQSVFLDPN LISSLNISET LAVSNGMTSN LCDEGLPNFL  60
NPTVIDSLRI SQTLVDRNRC IENLYGESIS KFSDTVLIEN SRGEQSLQIG NSCHGGIPSF  120
PDPISVGSLN VSQTCLDRNE LAGNLNGQAA SDFLDPVLID NLRISQTSGN QNGLTGVLND  180
DGPPCVMDLH LINSLGVCED LLDQNQFAFP PLQSDPKLNV VAPSNEGDAH EDFDFNDGDL  240
NYIGQMLMEE NMEEKVCMFQ ESTALQDTER SFYEAIGEKY PPPAGHYTVS NSDQNKISVD  300
GNYHNSIKNA NSRLLCPKMD PYPSESDIYS AQCIQVSVPL QTISQSSYST SSSSGTINDG  360
HVDSPVSTLR IPEICNSNES IMKFTKRVEE TGLGYNGKKR SAEKNEVAVN MEKNYENLHN  420
EDLEALEGRS SKQSAVSSDL TLKPEVFDMV LLCSGGRNES ALRQALQIVS IKNATDNDDS  480
KASNGGKKSR RKKQRGKRDT VDLRTLLTLC AEAVVADDRR NASEFLKQLR QHSSQTGDGM  540
QRLAHYFADG LEARMAGSGT QIYKALITKP TSAADILKAY QLFLAICPFR KISNFFSNKT  600
TMNLAQSATS VHVIDFGILY GFQWPCFIQR LSSRKGGPPR LRITGIDLPQ PGFRPAERVE  660
ETGKRLANYA ERFNVPFEFN AIAKKWETIK VEDIKINKGE VLVVNCLFRL RNLLDETVVV  720
NSPRDIVLKL IRELNPHVFI QGIVNGAYNS PFFITRFREA LFHFSSLFDM LDTNVPRNIH  780
ERILIEKTIF GQEAKNVIAC ETAERVERPE TYKQWHVRNM RAGFLPLPLN KEIMKMSRDR  840
AKVYNKDFVI DEDGEWLLQG WKGRIVYALS SWRPAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-484858761382Protein SCARECROW
5b3h_A3e-484868761381Protein SCARECROW
5b3h_D3e-484868761381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019151179.10.0PREDICTED: scarecrow-like protein 9
RefseqXP_019151180.10.0PREDICTED: scarecrow-like protein 9
RefseqXP_019151181.10.0PREDICTED: scarecrow-like protein 9
RefseqXP_019151182.10.0PREDICTED: scarecrow-like protein 9
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A1J6KJ680.0A0A1J6KJ68_NICAT; Scarecrow-like protein 14
STRINGXP_009611175.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein