PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000267.1_g00018.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GeBP
Protein Properties Length: 374aa    MW: 41867.5 Da    PI: 5.8072
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000267.1_g00018.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573111.74.7e-35149240298
                   DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqk 87 
                              lfqrlwse+Dei+lL G+i++++k++++p+ d+daf++f+++s++f+vsk+ql +Ki+r++kK+ ++  k     e+sfsk+h+qk
  Itr_sc000267.1_g00018.1 149 LFQRLWSEDDEIALLEGMIEYTEKENADPHTDLDAFHDFIRNSLHFTVSKNQLQNKIKRMRKKYINNAGK-----EKSFSKPHEQK 229
                              79****************************************************************9999.....99********* PP

                   DUF573  88 ifelskkiWgs 98 
                              +++ls+kiWg+
  Itr_sc000267.1_g00018.1 230 TYQLSRKIWGK 240
                              *********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.9E-31150239IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0005829Cellular Componentcytosol
GO:0009507Cellular Componentchloroplast
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MAKNRSEPKK SVAEEEDSST GDEGSESDSE SESEPEQTQT QMQIAKSPSA AATKVTEASC  60
MHAKIQAASS SSYETDSESD SESESQRPAP IVKPEITHEN PRKSSAEAKR PAPTADREVT  120
ESKRQKRNPE SVVEISEFKP SADDSKKQLF QRLWSEDDEI ALLEGMIEYT EKENADPHTD  180
LDAFHDFIRN SLHFTVSKNQ LQNKIKRMRK KYINNAGKEK SFSKPHEQKT YQLSRKIWGK  240
GDEKIEDKLG DSSQVRVVHA LMACNGSAKE EKINKNSMKK APVVQDAIET PEANAAATSS  300
GSKRMEAEKN ADGSNRFNSL SRFMEKNKGI VIGEEKRNEI EKKRKAVVVA EIDLFLKELE  360
LIQEQVKATL DAMK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019174275.11e-173PREDICTED: probable transcription factor At1g61730
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30421947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.12e-30DNA-binding storekeeper protein-related transcriptional regulator