PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000260.1_g00008.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Nin-like

Protein Properties

Length: 433aa MW: 49686.6 Da PI: 9.359

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000260.1_g00008.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	85.4	5.3e-27	301	350	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i ledl+kyF+lpi++A+k+L+v+lTvLK++CR++GI+RWPhRkiksl Itr_sc000260.1_g00008.1 301 ARIALEDLAKYFDLPITEASKSLKVGLTVLKKKCREFGIPRWPHRKIKSL 350 689*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	19.668	286	370	IPR003035	RWP-RK domain
Pfam	PF02042	2.5E-22	303	350	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence Send to blast
MAPAQTRVLR ALVVYINSMY KEMFRAVRVY RISGGSEEET EEKEYVLSSN RKDKRFGENG 60 GSRVLTLYGF DVAEQRAGVN NGVWKCVYVF DSLRSQSPVV DFCDEWIPIS HPGAEVWARK 120 EKTPLISMLS EHVFCTEPYF GRARTWYNDG NANRLFPSGV ELFGYDGDAN ETKTMRHNVV 180 SFRVQGLVNG EQSPFYAKLR ICIGCNVWSA TKAKRKDVLV FQDLVNDLHT ISKLARSAET 240 TDSEQSLLTE ACSSKNSSKH PMEMTTSVRF LDLNSIPDSD ADENNVISEP KKRRAAPEDI 300 ARIALEDLAK YFDLPITEAS KSLKVGLTVL KKKCREFGIP RWPHRKIKSL DRLISNLQEE 360 MQQQQEEDEA TAMAVSKKKR MIEFEKKRIE KKPSMDIREE TKKFRQDVFK RKHKARILER 420 ESQNRNNATL SLS

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence Send to blast

MAPAQTRVLR ALVVYINSMY KEMFRAVRVY RISGGSEEET EEKEYVLSSN RKDKRFGENG  60
GSRVLTLYGF DVAEQRAGVN NGVWKCVYVF DSLRSQSPVV DFCDEWIPIS HPGAEVWARK  120
EKTPLISMLS EHVFCTEPYF GRARTWYNDG NANRLFPSGV ELFGYDGDAN ETKTMRHNVV  180
SFRVQGLVNG EQSPFYAKLR ICIGCNVWSA TKAKRKDVLV FQDLVNDLHT ISKLARSAET  240
TDSEQSLLTE ACSSKNSSKH PMEMTTSVRF LDLNSIPDSD ADENNVISEP KKRRAAPEDI  300
ARIALEDLAK YFDLPITEAS KSLKVGLTVL KKKCREFGIP RWPHRKIKSL DRLISNLQEE  360
MQQQQEEDEA TAMAVSKKKR MIEFEKKRIE KKPSMDIREE TKKFRQDVFK RKHKARILER  420
ESQNRNNATL SLS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019182534.1	1e-134	PREDICTED: protein RKD5-like
Refseq	XP_019182535.1	1e-134	PREDICTED: protein RKD5-like
TrEMBL	A0A1U7VVH2	3e-69	A0A1U7VVH2_NICSY; protein RKD5 isoform X1
STRING	XP_009766399.1	4e-70	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14425	7	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	7e-44	RWP-RK domain-containing protein