PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000260.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 155aa    MW: 16501.3 Da    PI: 5.7125
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000260.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.000724364223
                             EETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                             +C  Cg+ F++  ++  H+++H
  Itr_sc000260.1_g00003.1 43 TCLVCGEGFPSVKSMFGHMKNH 64
                             7*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
PfamPF139121.2E-54466IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MSSSSRESSL SSSRGKSSIE TAQRSPRSNS GGSIPPPREG AMTCLVCGEG FPSVKSMFGH  60
MKNHKSRGWK GAYPPPAFDY ETEFAEYKHL LVKPMDQQEE EIEAAGEGIA GQASAPAQGG  120
PRGVTVPDLN ASPEKGEAAG EYLLPDLNFP PSRFL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009601935.15e-19PREDICTED: protein enabled homolog
RefseqXP_016472046.15e-19PREDICTED: protein enabled homolog
TrEMBLA0A1S4A6511e-17A0A1S4A651_TOBAC; protein enabled homolog
STRINGXP_009601935.12e-18(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9281713
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35700.13e-10C2H2 family protein