PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000259.1_g00009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | MYB | ||||||||
Protein Properties | Length: 253aa MW: 29292.1 Da PI: 9.8384 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.1 | 2e-18 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll+++vk++G g+W+++a+ g++R +k+c++rw +yl Itr_sc000259.1_g00009.1 13 KGPWTAEEDRLLIQYVKLHGEGRWNSVAKLQGLKRNGKSCRLRWVNYL 60 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 53.6 | 5.3e-17 | 66 | 110 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++ Itr_sc000259.1_g00009.1 66 RGQITPHEERIIIELHAKWGNR-WSTIARSLP-GRTDNEIKNYWRTH 110 7888******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.817 | 8 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.95E-31 | 10 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.7E-17 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-17 | 13 | 60 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-24 | 14 | 67 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.34E-13 | 15 | 60 | No hit | No description |
PROSITE profile | PS51294 | 25.684 | 61 | 115 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-15 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-14 | 66 | 110 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.7E-25 | 68 | 114 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.53E-11 | 70 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MMGWGVLDEG WRKGPWTAEE DRLLIQYVKL HGEGRWNSVA KLQGLKRNGK SCRLRWVNYL 60 RPDLKRGQIT PHEERIIIEL HAKWGNRWST IARSLPGRTD NEIKNYWRTH FKKKAKSSAA 120 DNTEKSRARL LRKQQFHLQQ LQQQQQQQQQ QYNIQTDITK KVIPLFDENN ETRVAAPSVP 180 QGQGGVFYPE QDQGFFFSLM NGYVPSVAEA PSNDQDSIMW DGLWNLDDFQ GNFCAVSAAN 240 KICSLQPIAA PFY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 6e-28 | 6 | 115 | 20 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019181215.1 | 1e-157 | PREDICTED: transcription factor MYB24-like | ||||
TrEMBL | A0A2P6QRR5 | 1e-100 | A0A2P6QRR5_ROSCH; Putative transcription factor MYB-HB-like family | ||||
STRING | XP_009795062.1 | 1e-100 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24310.1 | 2e-81 | myb domain protein 305 |