PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000257.1_g00021.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 787aa    MW: 87529.7 Da    PI: 4.7437
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000257.1_g00021.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM49.61.3e-1541372128
                      NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkya..tgkrknra....... 77 
                              p G+ F+P d +++ ++L + v+g+++++   i+e d+++  ePw+L  ++  +e+ +yf +k +kk +  t +r +r+       
  Itr_sc000257.1_g00021.1   4 PLGLFFQPFDYDVL-RFLFEFVTGTNNSE-GLIHEEDMFDDkEPWELI-RYGPSENMVYFLTKLKKKGKlmTARRVERTvgkkvkg 86 
                              7899********99.99*******99888.89****9886549****7.6666777889988887776655667777766777766 PP

                      NAM  78 tksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                               k g W+ + k k+v+++ ++ ++g k+ +v+ + ++p+ +  +W+m+e++l
  Itr_sc000257.1_g00021.1  87 KKPGNWHGQDKGKPVFDEkGKYVMGYKRCFVYKNRSEPE-QDGQWLMKEFSL 137
                              6699************98455569*******99766666.8*********97 PP

2GRAS3236e-994037841374
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                              l++lLl+cA +vssgdl++a+ +L ++s+ +s + d+m+Rl + f+ ALa rl++ + ++ykal++s+       +   a+++f +
  Itr_sc000257.1_g00021.1 403 LIKLLLTCASHVSSGDLHQADVCLGQISQSNSGSNDSMHRLGTWFASALAVRLVKRWAGVYKALNCSSLM---KFDLDRARSIFTK 485
                              689******************************************************************8...6677778999*** PP

                     GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeel 172
                              + P+l f++ + N+++++a+ ge+ vH++D++ s    W+++++ La+ p+gpp+lRiT v+s    +  +l ++g  L+k Ae+l
  Itr_sc000257.1_g00021.1 486 ALPYLGFAYAVINRTLVQAMLGERVVHVVDLGSSDQQLWVPFMRILATSPDGPPHLRITCVSS----NMIALDKLGACLKKEAEQL 567
                              ***************************************************************....9****************** PP

                     GRAS 173 gvpfefnvlvakrledleleeL.rvkpgEalaVnlvlqlhrll.............desvsles..erdevLklvkslsPkvvvvv 242
                              ++pf+fn+ v  +l dl+++++ +v++gEala  ++l+lh ll             ++s ++++  + de+L  + slsPk+v +v
  Itr_sc000257.1_g00021.1 568 DMPFQFNP-VNVHLRDLNFNSIvKVRSGEALAFISILNLHVLLaeddrvdaqfglnKDSKNIKHckHADEFLAKLCSLSPKLVMLV 652
                              ********.7999*******9978888****************************9555555555599****************** PP

                     GRAS 243 eqeadhnsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpv 327
                              eqe++hn +++++rf+e l+yysa+fds+++ +  +  eer  vE++ +g+ei+n+vac g er+erhe++++W  rl++a F+pv
  Itr_sc000257.1_g00021.1 653 EQESNHNLQKLVDRFVEGLRYYSAMFDSINVAFKGDLcEERLLVEEM-IGKEIENIVACDGLEREERHEKFANWMVRLGHAKFRPV 737
                              *****************************9999877789*******9.************************************** PP

                     GRAS 328 plsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                              +l  +++++a + ++ +++dgy++ +++gsl++gW+drp++svS W+
  Itr_sc000257.1_g00021.1 738 RLWGDTMDDAIRFVESYSGDGYKISSQRGSLMIGWHDRPIYSVSGWT 784
                              **********************************************5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-162166IPR003441NAC domain
PROSITE profilePS5100521.1273166IPR003441NAC domain
PfamPF023651.6E-75137IPR003441NAC domain
PROSITE profilePS5098545.226377764IPR005202Transcription factor GRAS
PfamPF035142.1E-96403784IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 787 aa     Download sequence    Send to blast
MEIPLGLFFQ PFDYDVLRFL FEFVTGTNNS EGLIHEEDMF DDKEPWELIR YGPSENMVYF  60
LTKLKKKGKL MTARRVERTV GKKVKGKKPG NWHGQDKGKP VFDEKGKYVM GYKRCFVYKN  120
RSEPEQDGQW LMKEFSLPET IVKKARAKYP IVEERKDFVL CRLERKKDDE DEDDEKSMTL  180
EQGGNDLEVE TTSQIMAPSP SPLETLAHTN DDMNSLLASL AAAGDTDGGH DQNISSYLDV  240
PVPVPVPVGD TDIFSSYLDG VPVPVPVGDT DIISSYLDGV PVPVPVGDTD IISSYLDGVP  300
VQVGDSDIIS SYLDGVRVPV PTGDTDIISS YLDGVPVPVP AGDTDIISSY LDGVPVPVPV  360
PVPTGDTDDI ISSYLDGVPV PVPAGDTDMS SYLVDSENNG IKLIKLLLTC ASHVSSGDLH  420
QADVCLGQIS QSNSGSNDSM HRLGTWFASA LAVRLVKRWA GVYKALNCSS LMKFDLDRAR  480
SIFTKALPYL GFAYAVINRT LVQAMLGERV VHVVDLGSSD QQLWVPFMRI LATSPDGPPH  540
LRITCVSSNM IALDKLGACL KKEAEQLDMP FQFNPVNVHL RDLNFNSIVK VRSGEALAFI  600
SILNLHVLLA EDDRVDAQFG LNKDSKNIKH CKHADEFLAK LCSLSPKLVM LVEQESNHNL  660
QKLVDRFVEG LRYYSAMFDS INVAFKGDLC EERLLVEEMI GKEIENIVAC DGLEREERHE  720
KFANWMVRLG HAKFRPVRLW GDTMDDAIRF VESYSGDGYK ISSQRGSLMI GWHDRPIYSV  780
SGWTCFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-4641078425378Protein SCARECROW
5b3h_D2e-4641078425378Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17388RRVERTVGKKVKGKKP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019195005.10.0PREDICTED: scarecrow-like protein 3
TrEMBLA0A2R6RKL51e-171A0A2R6RKL5_ACTCH; Scarecrow-like protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA135701216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.14e-89scarecrow-like 3