PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000257.1_g00021.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | GRAS | ||||||||
Protein Properties | Length: 787aa MW: 87529.7 Da PI: 4.7437 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 49.6 | 1.3e-15 | 4 | 137 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkya..tgkrknra....... 77 p G+ F+P d +++ ++L + v+g+++++ i+e d+++ ePw+L ++ +e+ +yf +k +kk + t +r +r+ Itr_sc000257.1_g00021.1 4 PLGLFFQPFDYDVL-RFLFEFVTGTNNSE-GLIHEEDMFDDkEPWELI-RYGPSENMVYFLTKLKKKGKlmTARRVERTvgkkvkg 86 7899********99.99*******99888.89****9886549****7.6666777889988887776655667777766777766 PP NAM 78 tksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 k g W+ + k k+v+++ ++ ++g k+ +v+ + ++p+ + +W+m+e++l Itr_sc000257.1_g00021.1 87 KKPGNWHGQDKGKPVFDEkGKYVMGYKRCFVYKNRSEPE-QDGQWLMKEFSL 137 6699************98455569*******99766666.8*********97 PP | |||||||
2 | GRAS | 323 | 6e-99 | 403 | 784 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 l++lLl+cA +vssgdl++a+ +L ++s+ +s + d+m+Rl + f+ ALa rl++ + ++ykal++s+ + a+++f + Itr_sc000257.1_g00021.1 403 LIKLLLTCASHVSSGDLHQADVCLGQISQSNSGSNDSMHRLGTWFASALAVRLVKRWAGVYKALNCSSLM---KFDLDRARSIFTK 485 689******************************************************************8...6677778999*** PP GRAS 87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeel 172 + P+l f++ + N+++++a+ ge+ vH++D++ s W+++++ La+ p+gpp+lRiT v+s + +l ++g L+k Ae+l Itr_sc000257.1_g00021.1 486 ALPYLGFAYAVINRTLVQAMLGERVVHVVDLGSSDQQLWVPFMRILATSPDGPPHLRITCVSS----NMIALDKLGACLKKEAEQL 567 ***************************************************************....9****************** PP GRAS 173 gvpfefnvlvakrledleleeL.rvkpgEalaVnlvlqlhrll.............desvsles..erdevLklvkslsPkvvvvv 242 ++pf+fn+ v +l dl+++++ +v++gEala ++l+lh ll ++s ++++ + de+L + slsPk+v +v Itr_sc000257.1_g00021.1 568 DMPFQFNP-VNVHLRDLNFNSIvKVRSGEALAFISILNLHVLLaeddrvdaqfglnKDSKNIKHckHADEFLAKLCSLSPKLVMLV 652 ********.7999*******9978888****************************9555555555599****************** PP GRAS 243 eqeadhnsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpv 327 eqe++hn +++++rf+e l+yysa+fds+++ + + eer vE++ +g+ei+n+vac g er+erhe++++W rl++a F+pv Itr_sc000257.1_g00021.1 653 EQESNHNLQKLVDRFVEGLRYYSAMFDSINVAFKGDLcEERLLVEEM-IGKEIENIVACDGLEREERHEKFANWMVRLGHAKFRPV 737 *****************************9999877789*******9.************************************** PP GRAS 328 plsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +l +++++a + ++ +++dgy++ +++gsl++gW+drp++svS W+ Itr_sc000257.1_g00021.1 738 RLWGDTMDDAIRFVESYSGDGYKISSQRGSLMIGWHDRPIYSVSGWT 784 **********************************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-16 | 2 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 21.127 | 3 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-7 | 5 | 137 | IPR003441 | NAC domain |
PROSITE profile | PS50985 | 45.226 | 377 | 764 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.1E-96 | 403 | 784 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 787 aa Download sequence Send to blast |
MEIPLGLFFQ PFDYDVLRFL FEFVTGTNNS EGLIHEEDMF DDKEPWELIR YGPSENMVYF 60 LTKLKKKGKL MTARRVERTV GKKVKGKKPG NWHGQDKGKP VFDEKGKYVM GYKRCFVYKN 120 RSEPEQDGQW LMKEFSLPET IVKKARAKYP IVEERKDFVL CRLERKKDDE DEDDEKSMTL 180 EQGGNDLEVE TTSQIMAPSP SPLETLAHTN DDMNSLLASL AAAGDTDGGH DQNISSYLDV 240 PVPVPVPVGD TDIFSSYLDG VPVPVPVGDT DIISSYLDGV PVPVPVGDTD IISSYLDGVP 300 VQVGDSDIIS SYLDGVRVPV PTGDTDIISS YLDGVPVPVP AGDTDIISSY LDGVPVPVPV 360 PVPTGDTDDI ISSYLDGVPV PVPAGDTDMS SYLVDSENNG IKLIKLLLTC ASHVSSGDLH 420 QADVCLGQIS QSNSGSNDSM HRLGTWFASA LAVRLVKRWA GVYKALNCSS LMKFDLDRAR 480 SIFTKALPYL GFAYAVINRT LVQAMLGERV VHVVDLGSSD QQLWVPFMRI LATSPDGPPH 540 LRITCVSSNM IALDKLGACL KKEAEQLDMP FQFNPVNVHL RDLNFNSIVK VRSGEALAFI 600 SILNLHVLLA EDDRVDAQFG LNKDSKNIKH CKHADEFLAK LCSLSPKLVM LVEQESNHNL 660 QKLVDRFVEG LRYYSAMFDS INVAFKGDLC EERLLVEEMI GKEIENIVAC DGLEREERHE 720 KFANWMVRLG HAKFRPVRLW GDTMDDAIRF VESYSGDGYK ISSQRGSLMI GWHDRPIYSV 780 SGWTCFN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 2e-46 | 410 | 784 | 25 | 378 | Protein SCARECROW |
5b3h_D | 2e-46 | 410 | 784 | 25 | 378 | Protein SCARECROW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 73 | 88 | RRVERTVGKKVKGKKP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019195005.1 | 0.0 | PREDICTED: scarecrow-like protein 3 | ||||
TrEMBL | A0A2R6RKL5 | 1e-171 | A0A2R6RKL5_ACTCH; Scarecrow-like protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13570 | 12 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 4e-89 | scarecrow-like 3 |