PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000254.1_g00017.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 332aa MW: 35987.8 Da PI: 8.7599

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000254.1_g00017.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	65.4	1.1e-20	15	60	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+W++eEdell ++v+++G+++W++I++ ++ gR++k+c++rw + Itr_sc000254.1_g00017.1 15 RGPWSPEEDELLTRLVEKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 60 89****************************.*********985 PP
2	Myb_DNA-binding	57	4.4e-18	69	111	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEde +++a++++G++ W+tIar ++ gRt++ +k++w++ Itr_sc000254.1_g00017.1 69 AFTAEEDETIIRAHAKFGNK-WATIARLLN-GRTDNAIKNHWNST 111 79****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	28.281	10	65	IPR017930	Myb domain
SuperFamily	SSF46689	1.83E-32	12	108	IPR009057	Homeodomain-like
SMART	SM00717	1.5E-18	14	63	IPR001005	SANT/Myb domain
Pfam	PF00249	4.0E-20	15	60	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.9E-27	16	68	IPR009057	Homeodomain-like
CDD	cd00167	1.06E-17	17	59	No hit	No description
SMART	SM00717	2.0E-15	66	114	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	21.713	67	116	IPR017930	Myb domain
Pfam	PF00249	2.1E-15	69	111	IPR001005	SANT/Myb domain
CDD	cd00167	1.00E-12	69	112	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.5E-23	69	115	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MATMMSQKKD VDRIRGPWSP EEDELLTRLV EKHGPRNWSL ISKSIPGRSG KSCRLRWCNQ 60 LSPQVEHRAF TAEEDETIIR AHAKFGNKWA TIARLLNGRT DNAIKNHWNS TLKRKCGSGS 120 EDSGFEPPRK RSASVGAAGV NVSGFYVSPG SPSGSDLSDS SLPQVFRPVA RTGGVFPTPV 180 PQIETDSDPA TSLTLSLPGS DSSETPTSQL DSPHIVQAHA PPSQSHAPQP QPHAPPPPPP 240 PPPICFSPVV APTPSQPPPP PPLPQSFEFL PAPPPQAAEK PLFSPEFLAV LQDMIRKEVR 300 TYMSGVEKNG VCMPTEAIRN AVVKRISLSR IE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1mse_C	2e-40	14	115	3	104	C-Myb DNA-Binding Domain
1msf_C	2e-40	14	115	3	104	C-Myb DNA-Binding Domain
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019156711.1	1e-156	PREDICTED: transcription factor MYB44-like
TrEMBL	A0A067KZQ6	1e-127	A0A067KZQ6_JATCU; MYB family protein
STRING	VIT_07s0129g01050.t01	1e-124	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1586	24	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	1e-77	myb domain protein 73