PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000254.1_g00017.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 332aa    MW: 35987.8 Da    PI: 8.7599
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000254.1_g00017.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding65.41.1e-201560147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                             rg+W++eEdell ++v+++G+++W++I++ ++ gR++k+c++rw + 
  Itr_sc000254.1_g00017.1 15 RGPWSPEEDELLTRLVEKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 60
                             89******************************.***********985 PP

2Myb_DNA-binding574.4e-1869111347
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              ++T+eEde +++a++++G++ W+tIar ++ gRt++ +k++w++ 
  Itr_sc000254.1_g00017.1  69 AFTAEEDETIIRAHAKFGNK-WATIARLLN-GRTDNAIKNHWNST 111
                              79******************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.2811065IPR017930Myb domain
SuperFamilySSF466891.83E-3212108IPR009057Homeodomain-like
SMARTSM007171.5E-181463IPR001005SANT/Myb domain
PfamPF002494.0E-201560IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-271668IPR009057Homeodomain-like
CDDcd001671.06E-171759No hitNo description
SMARTSM007172.0E-1566114IPR001005SANT/Myb domain
PROSITE profilePS5129421.71367116IPR017930Myb domain
PfamPF002492.1E-1569111IPR001005SANT/Myb domain
CDDcd001671.00E-1269112No hitNo description
Gene3DG3DSA:1.10.10.602.5E-2369115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MATMMSQKKD VDRIRGPWSP EEDELLTRLV EKHGPRNWSL ISKSIPGRSG KSCRLRWCNQ  60
LSPQVEHRAF TAEEDETIIR AHAKFGNKWA TIARLLNGRT DNAIKNHWNS TLKRKCGSGS  120
EDSGFEPPRK RSASVGAAGV NVSGFYVSPG SPSGSDLSDS SLPQVFRPVA RTGGVFPTPV  180
PQIETDSDPA TSLTLSLPGS DSSETPTSQL DSPHIVQAHA PPSQSHAPQP QPHAPPPPPP  240
PPPICFSPVV APTPSQPPPP PPLPQSFEFL PAPPPQAAEK PLFSPEFLAV LQDMIRKEVR  300
TYMSGVEKNG VCMPTEAIRN AVVKRISLSR IE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-40141153104C-Myb DNA-Binding Domain
1msf_C2e-40141153104C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019156711.11e-156PREDICTED: transcription factor MYB44-like
TrEMBLA0A067KZQ61e-127A0A067KZQ6_JATCU; MYB family protein
STRINGVIT_07s0129g01050.t011e-124(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15862471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.11e-77myb domain protein 73