PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000252.1_g00020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | LBD | ||||||||
Protein Properties | Length: 254aa MW: 27853.8 Da PI: 7.9542 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 88.8 | 6.8e-28 | 2 | 104 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +C++C+vlr++C++dC+l+p++ p++q++++ +++k++G++ +++l+++ p+ r+++++sl+yeA+ r+ +P++G++g++ Itr_sc000252.1_g00020.1 2 SCNGCRVLRKGCSEDCTLRPCLhwinsPQSQANATIFLAKFYGRAGLINLINQGPDLLRPAIFKSLLYEACGRIINPIHGSAGLVG 87 6************************************************************************************* PP DUF260 82 klqqqleqlkaelallk 98 +++++l+++++e++l + Itr_sc000252.1_g00020.1 88 EGRWELCTEAVEAVLKG 104 **********9998766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.02 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.8E-22 | 2 | 100 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MSCNGCRVLR KGCSEDCTLR PCLHWINSPQ SQANATIFLA KFYGRAGLIN LINQGPDLLR 60 PAIFKSLLYE ACGRIINPIH GSAGLVGEGR WELCTEAVEA VLKGMPITPL STGHGGAPAR 120 PIFPLKGSDI RHFSKDSRPV RRVRTRNRFK RSASVHGGAL LPAFDEFTAE PAKFSITGWD 180 CDKPENNGSN RAPSHDSLSV ETVEPSLVNR EWPVWIPETE TWTGDEDGEP MLELTLGVNP 240 ARRAPAEKLC ISNL |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB623910 | 8e-37 | AB623910.1 Camellia sinensis DNA, SSR marker, MSE0196. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019160131.1 | 1e-172 | PREDICTED: LOB domain-containing protein 40-like isoform X2 | ||||
TrEMBL | A0A068TWE6 | 6e-94 | A0A068TWE6_COFCA; Uncharacterized protein | ||||
STRING | XP_009777707.1 | 3e-89 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA886 | 24 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 6e-65 | LOB domain-containing protein 41 |