PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000252.1_g00010.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 298aa    MW: 34307.5 Da    PI: 5.7188
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000252.1_g00010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.19.8e-192774148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             rg+WT eEd ll+++++ +G g+W++ a++ g++Rt+k+c++rw++yl
  Itr_sc000252.1_g00010.1 27 RGPWTLEEDTLLIKYIAAHGEGRWNALAKCAGLRRTGKSCRLRWLNYL 74
                             89********************************************97 PP
2Myb_DNA-binding51.72e-1680123146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              rg+ T++E+ l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Itr_sc000252.1_g00010.1  80 RGNLTPQEQILILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 123
                              7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.4022474IPR017930Myb domain
SuperFamilySSF466893.39E-3125121IPR009057Homeodomain-like
SMARTSM007172.4E-162676IPR001005SANT/Myb domain
PfamPF002492.6E-172774IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.6E-242881IPR009057Homeodomain-like
CDDcd001671.56E-112974No hitNo description
PROSITE profilePS5129425.54675129IPR017930Myb domain
SMARTSM007175.1E-1579127IPR001005SANT/Myb domain
PfamPF002492.2E-1580123IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2382128IPR009057Homeodomain-like
CDDcd001671.19E-1084123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009686Biological Processgibberellin biosynthetic process
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MMVSKSGEIQ SLSNNNNEEE RFGELRRGPW TLEEDTLLIK YIAAHGEGRW NALAKCAGLR  60
RTGKSCRLRW LNYLKPDIKR GNLTPQEQIL ILELHSKWGN RWSKIAQHLP GRTDNEIKNY  120
WRTRVQKQAR QLKIDSNSKK FIEAVKRFWM PRLIEKMEQQ QTSTLSSSFI SSPSSSSSIS  180
TMEKQSPLNS LPSPITIPEP PKTDNPEIKN LNICSTDSFQ LHDDDDCYHV EIMGNSCYTG  240
EEEGFGHPAM SAFESRDISM LECQLAPDDW FGNDVADSLW NIDETWQYRK LEDFGDLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-25241291105MYB PROTO-ONCOGENE PROTEIN
1h88_C6e-252412955159MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-252412955159MYB PROTO-ONCOGENE PROTEIN
1h8a_C4e-252412924128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00216DAPTransfer from AT1G68320Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019160089.10.0PREDICTED: transcription factor MYB24-like
SwissprotQ9C9G71e-89MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A328DT031e-107A0A328DT03_9ASTE; Uncharacterized protein
TrEMBLA0A484L7E21e-107A0A484L7E2_9ASTE; Uncharacterized protein
STRINGXP_009626235.11e-105(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.11e-88myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]