PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000251.1_g00008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ERF | ||||||||
Protein Properties | Length: 315aa MW: 35091 Da PI: 6.5235 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.9 | 1.5e-19 | 122 | 171 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp r r +lg+++taeeAa +++a+ +l+g Itr_sc000251.1_g00008.1 122 KYRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAAMVYDNAAIQLRG 171 8********.**********72....45*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.6E-30 | 121 | 179 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.3E-13 | 122 | 171 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.66E-22 | 122 | 180 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.0E-37 | 122 | 185 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.749 | 122 | 179 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.82E-30 | 123 | 178 | No hit | No description |
PRINTS | PR00367 | 1.0E-10 | 123 | 134 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-10 | 145 | 161 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MFPGPVKYKY SEHRRQTKMF GPAPAAGFSG KRKSSEVNGG LPRVVRISVT DDDATDSSGD 60 EGEPGASGGR RRVKKYVNEV TIERCGRDSY GNDGVLKRRK MAPAPEADNR LKKKKKVNNV 120 RKYRGVRQRP WGKWAAEIRD PLRRVRLWLG TYDTAEEAAM VYDNAAIQLR GPHALTNFSV 180 PSTPASLVDN HRKPESPSLS GYNSGEESHA SRHSPNSVFL FNSEADSEPI FAHPNDVVIS 240 ENFSSFSPFP DHWFENPVQE PGLFHEPGFP DEIFEESCYE MFIGSSLGLG SSTIPADDYF 300 QDFEDIFGSD PLVAL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-19 | 121 | 178 | 4 | 62 | ATERF1 |
3gcc_A | 3e-19 | 121 | 178 | 4 | 62 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 97 | 115 | RRKMAPAPEADNRLKKKKK |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU172027 | 2e-75 | GU172027.1 Ipomoea batatas microsatellite Stv_Ipb_1801 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019160423.1 | 1e-177 | PREDICTED: ethylene-responsive transcription factor CRF1-like | ||||
TrEMBL | A0A1J6KL08 | 2e-99 | A0A1J6KL08_NICAT; Ethylene-responsive transcription factor crf2 | ||||
STRING | XP_009763317.1 | 2e-98 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA494 | 23 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23750.2 | 3e-42 | cytokinin response factor 2 |