PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000250.1_g00010.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HRT-like

Protein Properties

Length: 562aa MW: 62316.5 Da PI: 9.1764

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000250.1_g00010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	48.7	1.2e-15	289	319	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+l++GsvC r+Pv+g+KRC eH Gm++ Itr_sc000250.1_g00010.1 289 ICGVALGHGSVCIRSPVEGNKRCFEHRGMKV 319 8****************************97 PP
2	HRT-like	47	4.3e-15	351	381	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCG+iledGs C +P ++KRC eHKG+R+ Itr_sc000250.1_g00010.1 351 ICGFILEDGSSCVSKPFGKNKRCIEHKGRRV 381 8*****************************7 PP
3	HRT-like	61.3	1.5e-19	446	476	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+l dG++C+rqP gRKRCeeHKGmRi Itr_sc000250.1_g00010.1 446 ICGVNLHDGNFCTRQPSAGRKRCEEHKGMRI 476 8*****************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00719	0.00107	103	137	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000033	Biological Process	regulation of seed dormancy process
GO:0097100	Molecular Function	supercoiled DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 562 aa Download sequence Send to blast
MPAAAAAAAS SPAPAAARSA ADRLKREDCK RTKHDSVFSE WKILVGPSDW QDYMLGNDGA 60 ERYRTQNLPN CASCPGIYEL GIAVSNPRSR LDTNKIDTAK IVPVYVGQAD NVRTRLQQYG 120 RDGSHLENGC SKSEFSWDKN GCCQKGLTFF TSAFSRGFSI VYRWAPMKSK KEAEKAEAQL 180 LGKFDYAWNT DSNGARRHND VFCKLERISR ASLSRASLLP AIIRRFKLKL QKPRGVKIEV 240 CEPLPLENGS YFYGNTKRTH SLPQIFKFGR SQPRVVSVNF GVNENPGTIC GVALGHGSVC 300 IRSPVEGNKR CFEHRGMKVN GLTSKLIAEG NSHLPAESLS GISSYLDDTL ICGFILEDGS 360 SCVSKPFGKN KRCIEHKGRR VPGSHLKLLT NHKEHNMCSP IAESQNVFSW SDTDLDQEGN 420 MKEVWNESRT EHNDSQSVMH RGCIIICGVN LHDGNFCTRQ PSAGRKRCEE HKGMRIKNPN 480 TQHLNLNPPK TSDERSNSIA TCGATLSNGS SCRRKLAEVV PIVKEWWQHI GVSSSATENY 540 SSAIACGGSQ NPKMWARMED WV

Sequence ? help Back to Top

Protein Sequence Length: 562 aa Download sequence Send to blast

MPAAAAAAAS SPAPAAARSA ADRLKREDCK RTKHDSVFSE WKILVGPSDW QDYMLGNDGA  60
ERYRTQNLPN CASCPGIYEL GIAVSNPRSR LDTNKIDTAK IVPVYVGQAD NVRTRLQQYG  120
RDGSHLENGC SKSEFSWDKN GCCQKGLTFF TSAFSRGFSI VYRWAPMKSK KEAEKAEAQL  180
LGKFDYAWNT DSNGARRHND VFCKLERISR ASLSRASLLP AIIRRFKLKL QKPRGVKIEV  240
CEPLPLENGS YFYGNTKRTH SLPQIFKFGR SQPRVVSVNF GVNENPGTIC GVALGHGSVC  300
IRSPVEGNKR CFEHRGMKVN GLTSKLIAEG NSHLPAESLS GISSYLDDTL ICGFILEDGS  360
SCVSKPFGKN KRCIEHKGRR VPGSHLKLLT NHKEHNMCSP IAESQNVFSW SDTDLDQEGN  420
MKEVWNESRT EHNDSQSVMH RGCIIICGVN LHDGNFCTRQ PSAGRKRCEE HKGMRIKNPN  480
TQHLNLNPPK TSDERSNSIA TCGATLSNGS SCRRKLAEVV PIVKEWWQHI GVSSSATENY  540
SSAIACGGSQ NPKMWARMED WV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019151329.1	0.0	PREDICTED: protein EFFECTOR OF TRANSCRIPTION 2
Refseq	XP_019151331.1	0.0	PREDICTED: protein EFFECTOR OF TRANSCRIPTION 2
TrEMBL	A0A328E3W1	0.0	A0A328E3W1_9ASTE; Uncharacterized protein
STRING	PGSC0003DMT400083817	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7741	23	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	2e-78	effector of transcription2