PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000248.1_g00005.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family BBR-BPC
Protein Properties Length: 283aa    MW: 31136.4 Da    PI: 9.7568
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000248.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind3114.1e-9512831301
                GAGA_bind   1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd...........maflqrdkalaern 71 
                              mdddg + rn+gyyep+   k  lglqlm s+ +rd+++    r +n +++++++ +++rd           +++  rd ++++  
  Itr_sc000248.1_g00005.1   1 MDDDGLNMRNWGYYEPS--HKGPLGLQLMPSVVDRDTRTffsgR-ENPSMMASNGLFHPRDsvvsqasslthIDY-IRDGWINH-- 80 
                              9*****99*******99..7899***************999955.55569***********88777766666666.66666666.. PP

                GAGA_bind  72 kalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrak 157
                                    ++k+l++ +        +p g +v+ + + ++s+ q     le ++++   ee       + + +++ + + ++k++ ++
  Itr_sc000248.1_g00005.1  81 ------RDKFLHMFP-------GNPYGGGVMADPSGTQSSMQ----MLETDSTK---EE-----IANVEDPSVGKDSCPSKKRPGA 141
                              ......789999999.......45777777777777664433....13333332...22.....2223345666667777777888 PP

                GAGA_bind 158 kpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyP 243
                               +  +kakk+kk +++ kk+ +++   +r+k  kksi++v+ g+++D+s++P+PvC+CtG+++qCY+WG+GGWqSaCCtttiS+yP
  Itr_sc000248.1_g00005.1 142 AASPPKAKKPKKGPSALKKNDNPPA--QRAKPAKKSIEVVISGIDMDISSIPTPVCTCTGTPQQCYRWGCGGWQSACCTTTISMYP 225
                              888999999***9999999999888..79********************************************************* PP

                GAGA_bind 244 LPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                              LP++ krrgaRiagrKmSqgafkk+LekLa+eGy++s p+DL+++WAkHGtnkfvtir
  Itr_sc000248.1_g00005.1 226 LPMNNKRRGARIAGRKMSQGAFKKVLEKLASEGYNFSDPIDLRTYWAKHGTNKFVTIR 283
                              *********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012265.2E-1521283IPR010409GAGA-binding transcriptional activator
PfamPF062171.1E-1031283IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MDDDGLNMRN WGYYEPSHKG PLGLQLMPSV VDRDTRTFFS GRENPSMMAS NGLFHPRDSV  60
VSQASSLTHI DYIRDGWINH RDKFLHMFPG NPYGGGVMAD PSGTQSSMQM LETDSTKEEI  120
ANVEDPSVGK DSCPSKKRPG AAASPPKAKK PKKGPSALKK NDNPPAQRAK PAKKSIEVVI  180
SGIDMDISSI PTPVCTCTGT PQQCYRWGCG GWQSACCTTT ISMYPLPMNN KRRGARIAGR  240
KMSQGAFKKV LEKLASEGYN FSDPIDLRTY WAKHGTNKFV TIR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019176549.10.0PREDICTED: protein BASIC PENTACYSTEINE2-like
SwissprotQ9SKD04e-94BPC1_ARATH; Protein BASIC PENTACYSTEINE1
TrEMBLA0A2G9HBJ51e-142A0A2G9HBJ5_9LAMI; Uncharacterized protein
STRINGXP_009608500.11e-140(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90612429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.38e-90basic pentacysteine 2