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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Itr_sc000248.1_g00004.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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| Family |
BBR-BPC |
| Protein Properties |
Length: 286aa MW: 31327.6 Da PI: 10.0691 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Itr_sc000248.1_g00004.1 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 328.3 | 2.1e-100 | 1 | 286 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki...rernlalsekkaavaerd..........maflqrdkalaernka 73
mdddg + rn+gyyep+ k +lglqlmss+ +rd+k+ n +++ ++ +++rd +++ rd ++++
Itr_sc000248.1_g00004.1 1 MDDDGLNMRNWGYYEPT--HKGHLGLQLMSSVVDRDTKPflsGRDNPSMIVGNGIFHARDsivsqvpithIDY-IRDGWINH---- 79
9*****99*******99..899*****************9995556669***********9999999998888.89999998.... PP
GAGA_bind 74 lverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkp 159
++k+l++l+ +p g +v+ + + ++s+ q+ ++q +++ + ++ ++ + ++ + + ++k++ a+ p
Itr_sc000248.1_g00004.1 80 ----RDKFLHMLP-------GNPYGGGVMAEPSGTHSSMQMLQQQQQQQ------PDSTKDASVSAEDPSLGKDSGPSKKRAAAAP 148
....7899***99.......45777777777777765444222222222......2334556677778888888888866666666 PP
GAGA_bind 160 kekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLP 245
+ k k kk + +skk+++++ +r+k kksi++v+ gv++D+s++P+PvC+CtG+++qCY+WG+GGWqSaCCtttiS+yPLP
Itr_sc000248.1_g00004.1 149 EKGK--KSKKGPGASKKNENSPA--QRAKPAKKSIEVVISGVDMDISSIPTPVCTCTGTPQQCYRWGCGGWQSACCTTTISMYPLP 230
5444..44554556666666666..79*********************************************************** PP
GAGA_bind 246 vstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
++ krrgaRiagrKmSqgafkk+LekLaaeGy+++np+DL++hWAkHGtnkfvtir
Itr_sc000248.1_g00004.1 231 MNNKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRTHWAKHGTNKFVTIR 286
*******************************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 286 aa
Download sequence Send
to blast |
MDDDGLNMRN WGYYEPTHKG HLGLQLMSSV VDRDTKPFLS GRDNPSMIVG NGIFHARDSI 60
VSQVPITHID YIRDGWINHR DKFLHMLPGN PYGGGVMAEP SGTHSSMQML QQQQQQQPDS 120
TKDASVSAED PSLGKDSGPS KKRAAAAPEK GKKSKKGPGA SKKNENSPAQ RAKPAKKSIE 180
VVISGVDMDI SSIPTPVCTC TGTPQQCYRW GCGGWQSACC TTTISMYPLP MNNKRRGARI 240
AGRKMSQGAF KKVLEKLAAE GYNFANPIDL RTHWAKHGTN KFVTIR
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
