PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000246.1_g00028.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 149aa    MW: 16251.8 Da    PI: 8.031
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000246.1_g00028.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260130.19.7e-41251241100
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                              +CaaCk+lrr+C++ Cvlapyfp ++p kf ++h++FGasn++k+l++lpe++r d++ss+vyeA+ar+rdPvyG++g +  l++q
  Itr_sc000246.1_g00028.1  25 PCAACKFLRRRCVERCVLAPYFPPTEPLKFTIAHRVFGASNIIKTLQELPEDRRADTVSSMVYEANARVRDPVYGCAGAVCWLEKQ 110
                              7************************************************************************************* PP

                   DUF260  87 leqlkaelallkee 100
                              +++l+aela++++e
  Itr_sc000246.1_g00028.1 111 INELRAELAKAEAE 124
                              *********99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.96324125IPR004883Lateral organ boundaries, LOB
PfamPF031951.8E-4025122IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MAVVGGGATS PTSSAPPPAG VILSPCAACK FLRRRCVERC VLAPYFPPTE PLKFTIAHRV  60
FGASNIIKTL QELPEDRRAD TVSSMVYEAN ARVRDPVYGC AGAVCWLEKQ INELRAELAK  120
AEAEMLNLQC QNANLNAYVD WRLPPPPPQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-422413010116LOB family transfactor Ramosa2.1
5ly0_B1e-422413010116LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019198395.16e-94PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9LQR09e-61LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A068U7268e-69A0A068U726_COFCA; Uncharacterized protein
STRINGSolyc05g048740.2.12e-69(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.11e-50LOB domain-containing protein 1