PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000241.1_g00013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | LBD | ||||||||
Protein Properties | Length: 196aa MW: 21976.2 Da PI: 7.5277 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 140.1 | 7.2e-44 | 11 | 109 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +CaaCk+lrrkC ++Cv+apyfp e+p+kfanvhk+FGasnv+kll+++++++reda++sl+yeAear++dPvyG+vg i+ lq+q Itr_sc000241.1_g00013.1 11 PCAACKFLRRKCLPGCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEIQPHQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQ 96 7************************************************************************************* PP DUF260 87 leqlkaelallke 99 + +l++el+++++ Itr_sc000241.1_g00013.1 97 VLRLQKELDATNA 109 ********99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.314 | 10 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.6E-43 | 11 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MSSSSSYSNP PCAACKFLRR KCLPGCVFAP YFPPEEPQKF ANVHKIFGAS NVSKLLNEIQ 60 PHQREDAVNS LAYEAEARLK DPVYGCVGAI SVLQRQVLRL QKELDATNAD LMRYARNEMS 120 SCGGGHGYHH PTTPDDHNNM NNYHQMYNQQ RSNNNNQYGR SSRVGSGGVF YGQSYEMPNY 180 SSQWTNSSSG EHNPDE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-67 | 11 | 119 | 11 | 119 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-67 | 11 | 119 | 11 | 119 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019161359.1 | 1e-109 | PREDICTED: LOB domain-containing protein 25 | ||||
Refseq | XP_019161360.1 | 1e-109 | PREDICTED: LOB domain-containing protein 25 | ||||
Refseq | XP_019161361.1 | 1e-109 | PREDICTED: LOB domain-containing protein 25 | ||||
Swissprot | Q8L8Q3 | 5e-68 | LBD25_ARATH; LOB domain-containing protein 25 | ||||
TrEMBL | A0A1S4CXF4 | 1e-86 | A0A1S4CXF4_TOBAC; LOB domain-containing protein 25-like | ||||
STRING | XP_009597524.1 | 2e-87 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 6e-68 | LOB domain-containing protein 25 |
Publications ? help Back to Top | |||
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