PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000236.1_g00013.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 494aa    MW: 54695.9 Da    PI: 5.1133
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000236.1_g00013.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS289.31.1e-881394942374
                     GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                              ++ L++ Ae+++s+  +laq +L +l++  +s +g+p++R+a+yf+eAL++ l++s+         s +s+ +++++++a+k+fs+
  Itr_sc000236.1_g00013.1 139 IDELIQLAECFDSNAVQLAQVILPQLNQKlSSGAGNPLRRAAFYFKEALQSLLTGST--------RSGSSSFEVIQTIKAYKIFSN 216
                              578*************************9788899********************22........222233459999********* PP

                     GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakf 168
                              +sPi+ fs +taNqa+leav+g+  vH+iDfdi+ G +W++++++La+++     +pp lR+T+++++e   + e + ++e+La+f
  Itr_sc000236.1_g00013.1 217 ISPIPMFSSFTANQAMLEAVDGAMLVHVIDFDIGFGSHWASFMKELADKAelshTKPPILRVTALVPEE--FAVESRLIRENLAQF 300
                              ************************************************99888888***********65..8899999******** PP

                     GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nses 252
                              A+el++ ++ ++++ +++e l+++++++  gE+++V l+ +++r +           ++   ++++sP+vvv+v++e     + +s
  Itr_sc000236.1_g00013.1 301 ARELNIGLDVDFVLIRTFELLSFKAIKFIDGEKIVVLLSPAIFRRV--------GAGQFAADLRRVSPHVVVHVDSEGVVgpGPSS 378
                              *********************************************9........34568999***************66645889* PP

                     GRAS 253 Flerflealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqa 337
                              F + ++e le+ys +++sl +a+++   ++ +k+E+++l ++iv++v ++ga         ++W+e++ + GF+pv ls++a  qa
  Itr_sc000236.1_g00013.1 379 FRQTVIEGLEFYSGVLESLeAASVAGGGDWVKKIENFVLFPKIVEMVRAAGAG-------GMTWKEAFVATGFRPVGLSQFADFQA 457
                              *******************888899999***********************98.......899*********************** PP

                     GRAS 338 klllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                              + ll +v+  g++v +++++++l+W+dr+Lv++S+Wr
  Itr_sc000236.1_g00013.1 458 NFLLGRVQIGGFHVAKRHAEMLLCWHDRALVATSSWR 494
                              ************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.929112474IPR005202Transcription factor GRAS
PfamPF035143.7E-86139494IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MKVPVSSNEN WNSGAGNGWY EPKSVLELRR SPSPVLDQKA APAGNFDVSD DPLELADNLL  60
TNFEDWDSFM KELGLQDERK PDNHHNLLFA PSESQTHHHS ELTHSPEFVP SDFNFSSQFH  120
GNDNISSFDE NWNVGFDYID ELIQLAECFD SNAVQLAQVI LPQLNQKLSS GAGNPLRRAA  180
FYFKEALQSL LTGSTRSGSS SFEVIQTIKA YKIFSNISPI PMFSSFTANQ AMLEAVDGAM  240
LVHVIDFDIG FGSHWASFMK ELADKAELSH TKPPILRVTA LVPEEFAVES RLIRENLAQF  300
ARELNIGLDV DFVLIRTFEL LSFKAIKFID GEKIVVLLSP AIFRRVGAGQ FAADLRRVSP  360
HVVVHVDSEG VVGPGPSSFR QTVIEGLEFY SGVLESLEAA SVAGGGDWVK KIENFVLFPK  420
IVEMVRAAGA GGMTWKEAFV ATGFRPVGLS QFADFQANFL LGRVQIGGFH VAKRHAEMLL  480
CWHDRALVAT SSWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-2314449325378Protein SCARECROW
5b3h_A6e-2314449324377Protein SCARECROW
5b3h_D6e-2314449324377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019183010.10.0PREDICTED: scarecrow-like protein 15
SwissprotO232101e-139SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A1U7YWZ80.0A0A1U7YWZ8_NICSY; scarecrow-like protein 15
STRINGXP_009803270.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA83052230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-127GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]