PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000234.1_g00004.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 433aa    MW: 47592.1 Da    PI: 4.9937
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000234.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS285.61.4e-87464072373
                     GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fs 85 
                              ++lLl+cA a++s+d +laq++++ l++ as++gd++qRl++ f++AL +r ar  ++ y ++   + +     +++++++l  ++
  Itr_sc000234.1_g00004.1  46 ERLLLHCASALESNDVTLAQQVMWVLNNVASSTGDANQRLTSWFLRALVSRAARVYPKSYPTCGGGNGA---CGRVMSVTELagYV 128
                              579***************************************************777777666555554...566666666677** PP

                     GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakf 168
                              ++ P+++f++ +aN+aI eav+g+ +vHi+Df++++++QWp+L++aLa+Rpegpp lR+ + +   ++    + ++ee+g rLa+f
  Itr_sc000234.1_g00004.1 129 DLIPWYRFGFCAANSAIIEAVQGCAKVHILDFSVTHCMQWPTLIDALADRPEGPPALRLSVPSWRPPVapwLSLSTEEVGLRLANF 214
                              ************************************************************98876666788999************ PP

                     GRAS 169 AeelgvpfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnses 252
                              A++  +pf+f+v+     +d++   L + +  +Eal+Vn++  l +l+        +r+++L+++k l+P++++v++++ad++++s
  Itr_sc000234.1_g00004.1 215 AKSRSIPFQFSVI-----ADINNGGLGLFEdaDEALVVNCQNWLRYLP--------CRQTFLDTIKCLNPTLITVIDEDADLDAPS 287
                              ***********96.....67888888887777***************9........7889************************** PP

                     GRAS 253 FlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338
                              +  r++++++y + +fdsle+ l+++s++r+ +E+  +g++i+n++  eg +r+er e+  + + r++++GF +vp+se++ k++k
  Itr_sc000234.1_g00004.1 288 LSSRIVNCFNYLWIIFDSLETFLSKDSQQRAEYEAD-VGQKIENIIGFEGGQRIERLESSTTLSTRMRNSGFLNVPFSEETIKEVK 372
                              ************************************.************************************************* PP

                     GRAS 339 lllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                               +l +++ ++g++ ++++g+lvl+Wk+++ v+++ W
  Itr_sc000234.1_g00004.1 373 FVLDEHAsGWGMK-KKDDGTLVLTWKGHSSVFATTW 407
                              *******555544.5789*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575135No hitNo description
PROSITE profilePS5098542.51219388IPR005202Transcription factor GRAS
PfamPF035144.7E-8546407IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MGQVVRGNPT FQNLATFLNN NPQTSLSSAG AIGGCLLGSL DGACTERLLL HCASALESND  60
VTLAQQVMWV LNNVASSTGD ANQRLTSWFL RALVSRAARV YPKSYPTCGG GNGACGRVMS  120
VTELAGYVDL IPWYRFGFCA ANSAIIEAVQ GCAKVHILDF SVTHCMQWPT LIDALADRPE  180
GPPALRLSVP SWRPPVAPWL SLSTEEVGLR LANFAKSRSI PFQFSVIADI NNGGLGLFED  240
ADEALVVNCQ NWLRYLPCRQ TFLDTIKCLN PTLITVIDED ADLDAPSLSS RIVNCFNYLW  300
IIFDSLETFL SKDSQQRAEY EADVGQKIEN IIGFEGGQRI ERLESSTTLS TRMRNSGFLN  360
VPFSEETIKE VKFVLDEHAS GWGMKKKDDG TLVLTWKGHS SVFATTWVPP PNHHSIHDIS  420
CILESSDQYS IMI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B5e-553940927420Protein SHORT-ROOT
5b3h_E5e-553940927420Protein SHORT-ROOT
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019167744.10.0PREDICTED: scarecrow-like protein 32
TrEMBLF6HIM60.0F6HIM6_VITVI; Uncharacterized protein
STRINGVIT_12s0059g02770.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA103032227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-119GRAS family protein