PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000230.1_g00008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | WRKY | ||||||||
Protein Properties | Length: 523aa MW: 57040.3 Da PI: 7.1127 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97 | 1.2e-30 | 276 | 334 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ Itr_sc000230.1_g00008.1 276 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAtGCPVRKQVQRCAEDRTILITTYEGNHNHP 334 7***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.8E-33 | 260 | 336 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.05E-27 | 268 | 336 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.643 | 270 | 336 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.0E-36 | 275 | 335 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-26 | 277 | 334 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 523 aa Download sequence Send to blast |
MESLVNNGSS PPPTIQFPVS RFINPADHRH RRHEHGQEDP VDKRKVMDEM DFFADKSKDE 60 NAGRKDLHAP TELDFSINTC LRLLTSNTSS DDQSMVEDRL PSDCEKNGNK TELVAVKAEL 120 ERMSAENRVL RDMLSQVSDN YTNLQTQMMS LMQRQKDNHH NHGKVDEEDN SNNGGIKFPR 180 QFMDLGLATR RSNDGASDEA NLSSSPEGRN LRERSSRSPT SREESPEKGS SSGWGPNKVP 240 RLDHGPESSS VDQATEATMR KARVSVRARS DAPMITDGCQ WRKYGQKMAK GNPCPRAYYR 300 CTMATGCPVR KQVQRCAEDR TILITTYEGN HNHPLPPAAM AMASTTSSAA KMLLSGSIPS 360 ADGLMNPNIL AKTLFPCSSS MATISASAPF PTVTLDLTQT PNPNPLQFPP RQPNNNPQFP 420 LPCSTNPAAT LPQIFNQALY NQSKFSGLQL SQDLENHQSS QNPQLIDTLN SLTGDPNFTT 480 AAIAAAITSI IGNSSNPATV TNGASNNANN GGSKSTNSSV PAN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-21 | 262 | 338 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019158774.1 | 0.0 | PREDICTED: probable WRKY transcription factor 31 | ||||
Swissprot | Q9C519 | 1e-126 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A1S3Y0V2 | 0.0 | A0A1S3Y0V2_TOBAC; probable WRKY transcription factor 42 | ||||
TrEMBL | A0A1U7YN04 | 0.0 | A0A1U7YN04_NICSY; probable WRKY transcription factor 42 | ||||
STRING | XP_009804478.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA945 | 24 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-109 | WRKY family protein |