PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000228.1_g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | MYB | ||||||||
Protein Properties | Length: 294aa MW: 33104.7 Da PI: 7.3944 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.8 | 2.9e-09 | 15 | 46 | 1 | 32 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 +g+WT++Ed ll ++++++G g W++++ + g Itr_sc000228.1_g00006.1 15 KGAWTEQEDNLLRKCIHKYGEGKWHLVPVRAG 46 79*************************99998 PP | |||||||
2 | Myb_DNA-binding | 37.6 | 5e-12 | 100 | 143 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg + +E +l+ +++k+lG++ W++Ia +++ gRt++++k+ w++ Itr_sc000228.1_g00006.1 100 RGDFNLDEIDLIMRLHKLLGNR-WSLIAGRIP-GRTANDVKNLWNT 143 788999****************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.253 | 10 | 61 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.2E-19 | 12 | 45 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.79E-7 | 12 | 57 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-10 | 14 | 96 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-7 | 15 | 46 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.34E-7 | 17 | 94 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.2E-19 | 77 | 96 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.63E-17 | 80 | 152 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.762 | 95 | 149 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-20 | 97 | 148 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-9 | 99 | 147 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.3E-11 | 100 | 143 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.25E-7 | 103 | 145 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MADSSSSEPP SGVKKGAWTE QEDNLLRKCI HKYGEGKWHL VPVRAGKCCV ERMNDLYSKQ 60 LQFPFNTTAV SAMTMVSSLN RCRKSCRLRW LNYLRPDIKR GDFNLDEIDL IMRLHKLLGN 120 RWSLIAGRIP GRTANDVKNL WNTRLQKKTI ANNTPSSGQE KWKDKAPKAT ENTAVIRPRP 180 RRFVMTSSSR TLPITGKTTI VTSEVVQFQG HNMPPPVPAA AESTSGPRLI ENADPNNSII 240 DLPGEAETSD DLGQWLDDFL LDMEFDGDGM ACMQEGQIEW CDFHIDSDLL DLLS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-17 | 15 | 149 | 7 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019182607.1 | 1e-159 | PREDICTED: transcription factor MYB90-like isoform X2 | ||||
TrEMBL | Q1HAY2 | 1e-97 | Q1HAY2_IPONI; R2R3-MYB transcriptional regulator |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 2e-55 | myb domain protein 113 |