PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000220.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | HSF | ||||||||
Protein Properties | Length: 130aa MW: 15281.6 Da PI: 9.9057 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 23.4 | 1.6e-07 | 16 | 48 | 71 | 103 |
TTTTXTTSEEEEESXXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 71 kskskekiweFkhksFkkgkkellekikrkkse 103 +k ++k weF+h++F++g+++ll +i rkk e Itr_sc000220.1_g00001.1 16 FKKVTPKRWEFQHEKFQRGRRHLLVEIARKKAE 48 22224888**********************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.4E-6 | 11 | 45 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.2E-4 | 15 | 45 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 130 aa Download sequence Send to blast |
MGKHCLSTLN DHNKGFKKVT PKRWEFQHEK FQRGRRHLLV EIARKKAEPS AFPAYLRANY 60 EEEEDQDTIT SSTSTTTLSS SSRLLLMNLL EENKKLRKER MELQMQIAHF KTLQMRLLEC 120 LSSHCMGTQQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019171865.1 | 2e-57 | PREDICTED: heat stress transcription factor B-2a-like | ||||
TrEMBL | A0A2G9FWJ6 | 2e-35 | A0A2G9FWJ6_9LAMI; Uncharacterized protein | ||||
STRING | XP_004505050.1 | 7e-34 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10707 | 18 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46264.1 | 7e-09 | heat shock transcription factor B4 |