PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000219.1_g00044.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

GRAS

Protein Properties

Length: 442aa MW: 49838.4 Da PI: 7.5897

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000219.1_g00044.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	406.3	3e-124	66	441	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl.. 83 +++ L++cAe +s +d+++a++l++ l + sp gd+ +Rla+ ft+AL+ rl+r + + ++a++p + +e ++++ +++ Itr_sc000219.1_g00044.1 66 MRQFLISCAELISRSDFSAAHRLISFLASNTSPFGDSSERLAHQFTRALSLRLHRsISASAASAVAPLPFPELQMEQPGLVQSSyl 151 5789*************************************************5455667777888888777665544444345 PP GRAS 84 .fsevsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLa 166 +++++P+++f+hltaNqaIlea++ ++vHi+Dfd+++G+QWp+L+qaLa+R +pp+lRiTg g+ + + l++tg+rLa Itr_sc000219.1_g00044.1 152 sLNQITPFIRFTHLTANQAILEAIDDGqrNAVHILDFDVMHGVQWPPLMQALADR-YPPPTLRITGTGN----DLDILRRTGDRLA 232 6*******************9775789*******************9.999******....9******** PP GRAS 167 kfAeelgvpfefnvl...vakrledl..eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqead 247 kfA++lg++f+f++l ++ ed+ l++ + p+E+laVn+vl lhrll+++ +l+ +L+ +ks++P+vv+v+e+ea+ Itr_sc000219.1_g00044.1 233 KFAHSLGLRFQFHPLllsNNEDDEDVdpPLSSVVLLPDETLAVNCVLYLHRLLKNREKLNR----FLHRIKSMRPRVVTVAEREAS 314 ***********5332224444433356777888************88888877....***************** PP GRAS 248 hnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplseka 333 hns+ Fl+rf+eal++y+++fdslea+lp+ s+er+ vE++++greiv++va+eg++r+erhe++++W++ l++ GF+++ ls +a Itr_sc000219.1_g00044.1 315 HNSSCFLQRFVEALDHYAVVFDSLEATLPPSSRERVAVEQVWFGREIVDIVAAEGEKRKERHEKFRTWEMLLRSTGFSNIGLSPFA 400 ********************************************************************************** PP GRAS 334 akqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 +qaklllr ++ s+gy++ +s++lgW+++pL+svS+W Itr_sc000219.1_g00044.1 401 LSQAKLLLRLHYpSEGYQLRVIADSFFLGWQNHPLFSVSSW 441 *************************************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.897	40	421	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.0E-121	66	441	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010223	Biological Process	secondary shoot formation

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence Send to blast
MLGSFGSSSS SRSHDEQDTT NNHNNNEPPS SVVAPLPPFQ FHQIQRRRTV FASSSSSSSS 60 PPAIQMRQFL ISCAELISRS DFSAAHRLIS FLASNTSPFG DSSERLAHQF TRALSLRLHR 120 SISASAASAV APLPFPELQM EQPGLVQSSY LSLNQITPFI RFTHLTANQA ILEAIDDGQR 180 NAVHILDFDV MHGVQWPPLM QALADRYPPP TLRITGTGND LDILRRTGDR LAKFAHSLGL 240 RFQFHPLLLS NNEDDEDVDP PLSSVVLLPD ETLAVNCVLY LHRLLKNREK LNRFLHRIKS 300 MRPRVVTVAE REASHNSSCF LQRFVEALDH YAVVFDSLEA TLPPSSRERV AVEQVWFGRE 360 IVDIVAAEGE KRKERHEKFR TWEMLLRSTG FSNIGLSPFA LSQAKLLLRL HYPSEGYQLR 420 VIADSFFLGW QNHPLFSVSS WH

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence Send to blast

MLGSFGSSSS SRSHDEQDTT NNHNNNEPPS SVVAPLPPFQ FHQIQRRRTV FASSSSSSSS  60
PPAIQMRQFL ISCAELISRS DFSAAHRLIS FLASNTSPFG DSSERLAHQF TRALSLRLHR  120
SISASAASAV APLPFPELQM EQPGLVQSSY LSLNQITPFI RFTHLTANQA ILEAIDDGQR  180
NAVHILDFDV MHGVQWPPLM QALADRYPPP TLRITGTGND LDILRRTGDR LAKFAHSLGL  240
RFQFHPLLLS NNEDDEDVDP PLSSVVLLPD ETLAVNCVLY LHRLLKNREK LNRFLHRIKS  300
MRPRVVTVAE REASHNSSCF LQRFVEALDH YAVVFDSLEA TLPPSSRERV AVEQVWFGRE  360
IVDIVAAEGE KRKERHEKFR TWEMLLRSTG FSNIGLSPFA LSQAKLLLRL HYPSEGYQLR  420
VIADSFFLGW QNHPLFSVSS WH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	6e-63	73	441	26	378	Protein SCARECROW
5b3h_A	5e-63	73	441	25	377	Protein SCARECROW
5b3h_D	5e-63	73	441	25	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269\|PubMed:12730136}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019183097.1	0.0	PREDICTED: scarecrow-like protein 18
Swissprot	Q9ZWC5	1e-129	SCL18_ARATH; Scarecrow-like protein 18
TrEMBL	A0A1S3XTB6	0.0	A0A1S3XTB6_TOBAC; scarecrow-like protein 18
TrEMBL	A0A1U7VAL7	0.0	A0A1U7VAL7_NICSY; scarecrow-like protein 18
STRING	XP_009765072.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11298	22	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55580.1	1e-124	GRAS family protein

Publications ? help Back to Top
Zhang B, et al. Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat. Sci Rep, 2015. 5: p. 12211 [PMID:26197925]