PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000218.1_g00009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | MYB_related | ||||||||
Protein Properties | Length: 131aa MW: 13914.7 Da PI: 4.9229 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.5 | 3.5e-19 | 48 | 93 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v ++G ++W++Iar ++ gR++k+c++rw + Itr_sc000218.1_g00009.1 48 KGPWSPEEDAILCELVSKFGARNWTLIARGIP-GRSGKSCRLRWCNQ 93 79******************************.***********985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.478 | 43 | 98 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.46E-18 | 45 | 104 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.5E-16 | 47 | 96 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-18 | 48 | 93 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-23 | 49 | 104 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.56E-16 | 50 | 92 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 131 aa Download sequence Send to blast |
MEGETEERSD LKLVAVAAAS DANGDGGAEA MVVDGGGDEN SGSGGKVKGP WSPEEDAILC 60 ELVSKFGARN WTLIARGIPG RSGKSCRLRW CNQLDPSVKR KPFSGKTIAI SNSISLFDLL 120 FGVDFGQRFF C |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-18 | 47 | 104 | 6 | 63 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for male gametophyte (pollen) development. {ECO:0000269|PubMed:22101548}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: May be the target of the microRNA (miRNA) MIR393a. {ECO:0000269|PubMed:15258262}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019151687.1 | 5e-61 | PREDICTED: myb-related protein 330-like | ||||
Swissprot | O04192 | 6e-27 | MYB25_ARATH; Transcription factor MYB25 | ||||
TrEMBL | A0A484LLU1 | 3e-42 | A0A484LLU1_9ASTE; Uncharacterized protein | ||||
STRING | POPTR_0008s06320.1 | 6e-35 | (Populus trichocarpa) | ||||
STRING | EMJ06514 | 1e-33 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA16833 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55730.1 | 1e-30 | myb domain protein 109 |
Publications ? help Back to Top | |||
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