PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000214.1_g00017.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 389aa    MW: 42276.9 Da    PI: 6.6853
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000214.1_g00017.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.9e-1981131155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              + y+GVr++  +g+WvAeIr+p   + r  r +lg+fg+a eAa a+++a+++++g
  Itr_sc000214.1_g00017.1  81 CNYRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFGSAIEAALAYDEAARAMYG 131
                              56*****999.**********8...3.35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.7E-1481131IPR001471AP2/ERF domain
CDDcd000183.29E-3081141No hitNo description
Gene3DG3DSA:3.30.730.101.3E-2982140IPR001471AP2/ERF domain
PROSITE profilePS5103220.63982139IPR001471AP2/ERF domain
SMARTSM003801.6E-3682145IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2082140IPR016177DNA-binding domain
PRINTSPR003677.3E-98394IPR001471AP2/ERF domain
PRINTSPR003677.3E-9105121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MAVIQQTPNM PSLPVDYSRK RKSRSRRNGT KDVAETLAKW KEYNERLDSV DGMGKPARKV  60
PAKGSKKGCM KGKGGPENGH CNYRGVRQRT WGKWVAEIRE PNRGSRLWLG TFGSAIEAAL  120
AYDEAARAMY GPCARLNLPN HTSSKESCSP MLPNSTSSGD SSSAESTSPP TTSASESTTA  180
SSLSNIYPAN KTKVEHGAYK IKHEDGRIES GIDGTRPPFQ DTGTPVSSMK QEPKRELLDS  240
NIKQTAPDRA KQEAASINHQ VDAAQDFLDN FSWDEMFDVE ELLGALDTAP PNAPGTFANI  300
GQGGQAAYSY SQSQNLSSQL LKPDARPLGN LQPMEQYASA GANNGLDFLK PGRQEDNGLD  360
FLKPGRQEDL NFSLDDLSFL ELDSQLGGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-1682146570ATERF1
3gcc_A7e-1682146570ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11722SRKRKS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019151161.10.0PREDICTED: dehydration-responsive element-binding protein 2C-like
TrEMBLA0A1J6K3I91e-105A0A1J6K3I9_NICAT; Dehydration-responsive element-binding protein 2c
STRINGXP_009594350.11e-106(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37012445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.14e-34ERF family protein