PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc000214.1_g00007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | LBD | ||||||||
Protein Properties | Length: 180aa MW: 20003.4 Da PI: 8.2051 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 133.7 | 7e-42 | 12 | 111 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +CaaCk+l+r+C+++C +apyf +++pkkfa vhk+FGasnv+k+l+++pee+red+++slvyeAe+r+rdPvyG++g i +lq++ Itr_sc000214.1_g00007.1 12 SCAACKFLKRRCVPNCQFAPYFRSDEPKKFAKVHKVFGASNVSKILNEVPEEQREDTVNSLVYEAEVRLRDPVYGCIGAIASLQRR 97 6************************************************************************************* PP DUF260 87 leqlkaelallkee 100 +++l+++l+l++++ Itr_sc000214.1_g00007.1 98 MAELQNDLVLARAR 111 ********999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.756 | 11 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.8E-41 | 12 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MKNHQEPRSS SSCAACKFLK RRCVPNCQFA PYFRSDEPKK FAKVHKVFGA SNVSKILNEV 60 PEEQREDTVN SLVYEAEVRL RDPVYGCIGA IASLQRRMAE LQNDLVLARA RLAFYATANP 120 PTAPASSSSS SSFFNYDPNL PSSYLDFQPS GGFSGAYDHQ NSLILDHPGS LNQFGQFPFP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-46 | 7 | 116 | 6 | 115 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-46 | 7 | 116 | 6 | 115 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019151098.1 | 1e-112 | PREDICTED: LOB domain-containing protein 21 | ||||
Swissprot | Q9SRL8 | 5e-60 | LBD21_ARATH; LOB domain-containing protein 21 | ||||
TrEMBL | A0A1S4C1U5 | 2e-85 | A0A1S4C1U5_TOBAC; LOB domain-containing protein 21-like | ||||
STRING | XP_009630762.1 | 3e-86 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11090.1 | 1e-60 | LOB domain-containing protein 21 |
Publications ? help Back to Top | |||
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