PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000214.1_g00006.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family Trihelix
Protein Properties Length: 278aa    MW: 31181.3 Da    PI: 9.9954
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000214.1_g00006.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix44.73.4e-1420103186
                 trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf..erspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 
                              +W++  + +Liea  ++  +l+rg+l++++W+ev++++  r  g+  +r+ +qCk++ + l+k+yk +k  ++       s +p++
  Itr_sc000214.1_g00006.1  20 CWSEGATETLIEAWGDRYLKLNRGNLRQKDWKEVADAVnsRGNGVkpQRTDVQCKNRVDTLKKKYKLEKSKSSP------SIWPFY 99 
                              7*************************************55333345589999**************99887775......57**** PP

                 trihelix  83 dqle 86 
                              d+l+
  Itr_sc000214.1_g00006.1 100 DRLD 103
                              *997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.6E-2718104No hitNo description
Gene3DG3DSA:1.10.10.600.0014585IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MEGPAAQTKP RPHAGGREDC WSEGATETLI EAWGDRYLKL NRGNLRQKDW KEVADAVNSR  60
GNGVKPQRTD VQCKNRVDTL KKKYKLEKSK SSPSIWPFYD RLDFLVGTNA ATPPSLNRKS  120
TTITLTVKPG SSPNSTKPPA LVYSGGSSKP NSSGSNNSSL GGAGEDDLLF TGPGKKRKLD  180
YVDLSEETTA YKELARAILR FGEIYERIES SKQQQIMELE KQRMEFSKDL EVQRMNMFME  240
AQLQLEKSKR TAKHSPAAGF GWLRLIHIVP VEFYLFFG
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019151555.11e-147PREDICTED: trihelix transcription factor ASIL2-like isoform X2
SwissprotQ9LJG86e-34ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLM1CY121e-122M1CY12_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000771991e-123(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA137071215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11100.13e-64sequence-specific DNA binding transcription factors