PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Itr_sc000214.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 313aa MW: 33420.8 Da PI: 7.5598 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.9 | 5.3e-18 | 59 | 108 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+WvAeIr+p++ r+r +lg+f tae+Aa+a+++a+ l+g Itr_sc000214.1_g00005.1 59 KYRGVRQRS-WGKWVAEIREPKK---RTRRWLGTFATAEDAARAYDRAAIVLYG 108 7*****999.**********965...5999******************988776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.14E-21 | 59 | 116 | No hit | No description |
SuperFamily | SSF54171 | 7.85E-21 | 59 | 116 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 6.6E-30 | 59 | 116 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-38 | 59 | 122 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.392 | 59 | 116 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-11 | 59 | 108 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-10 | 60 | 71 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-10 | 82 | 98 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006970 | Biological Process | response to osmotic stress | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0009744 | Biological Process | response to sucrose | ||||
GO:0009749 | Biological Process | response to glucose | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0010353 | Biological Process | response to trehalose | ||||
GO:0010449 | Biological Process | root meristem growth | ||||
GO:0010896 | Biological Process | regulation of triglyceride catabolic process | ||||
GO:0031930 | Biological Process | mitochondria-nucleus signaling pathway | ||||
GO:0032880 | Biological Process | regulation of protein localization | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048316 | Biological Process | seed development | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 313 aa Download sequence Send to blast |
MATHHEINPN IHNSITPPQP PTSNAANLEC NAAAAPSGEG GGKRGGGKGR GGPDNSKFKY 60 RGVRQRSWGK WVAEIREPKK RTRRWLGTFA TAEDAARAYD RAAIVLYGSK AQLNLQPSGN 120 SDDGSSSSSQ SSKRSTAYST QNLRPILPKP PGFGLVPPSA AAGGGGGAYI PYAFTPTLQY 180 PPEILQQYSL QLPQPPQQPP FRSSEAIVLC NSNPNPNPNP TPAPNPNHPE SDPQTQQQDD 240 FSFYDEMNSL VGSVGSSLSL SSTMAAAPAF GSPGSPMFWP TGEDGFGGSS IWDYPNVDQY 300 QLFDFNQDNL GKI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-17 | 60 | 115 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 40 | 46 | GGKRGGG |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019151027.1 | 1e-119 | PREDICTED: ethylene-responsive transcription factor ABI4 | ||||
TrEMBL | A0A328E3X3 | 1e-64 | A0A328E3X3_9ASTE; Uncharacterized protein | ||||
STRING | VIT_13s0067g01400.t01 | 2e-50 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G40220.1 | 8e-25 | ERF family protein |