PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000212.1_g00014.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 410aa    MW: 44225.8 Da    PI: 8.9376
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000212.1_g00014.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35.2e-20208257255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr+++ +g+W+AeIrdp     + +r++lg+f tae Aa+a+++a+++++g
  Itr_sc000212.1_g00014.1 208 RYRGVRQRP-WGKWAAEIRDPQ----KaARVWLGTFETAEAAARAYDEAALRFRG 257
                              7********.**********93....36*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.5E-33208266IPR001471AP2/ERF domain
PROSITE profilePS5103225.818208265IPR001471AP2/ERF domain
SMARTSM003801.3E-37208271IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-22208266IPR016177DNA-binding domain
PfamPF008476.3E-14208257IPR001471AP2/ERF domain
PRINTSPR003671.5E-11209220IPR001471AP2/ERF domain
CDDcd000181.79E-14216267No hitNo description
PRINTSPR003671.5E-11231247IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MCLFIKVAND GDSDEFAIFQ ATGNRREEFG GAVESVFTES FEGMMQRRQL QTETDYVLSA  60
AAPPQPIFSE FGQMREMSAM VTALTHVVSG QQRSYQTESA APVKSPLVGG SGLYSANSPS  120
SAYSSSSSGS LAGQKRRREQ EEGVTQFADQ APRVYGGFRG GESSSSSVKL EPTNFITPPI  180
TAVATSSTVT TAVAAGVQDE GNGERRRRYR GVRQRPWGKW AAEIRDPQKA ARVWLGTFET  240
AEAAARAYDE AALRFRGNRA KLNFPENVRS LPPPQAAQLP ANAASHQPSF QSHHLRPMQC  300
SPAVAGDYLA YSQLLQNPGD VHAQRPNSLL EQMFRASSMA AFHSHSFPSS SPSIIAPSGF  360
STASSPFPLT FSGQQSSYFR PQSSQSPATG SSFQAPYWTN SGAQYPPSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-23207270468ATERF1
3gcc_A2e-23207270468ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203208ERRRRY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019175167.10.0PREDICTED: ethylene-responsive transcription factor ABR1-like
RefseqXP_019175168.10.0PREDICTED: ethylene-responsive transcription factor ABR1-like
TrEMBLA0A1S4B2Q42e-85A0A1S4B2Q4_TOBAC; ethylene-responsive transcription factor ABR1-like isoform X2
TrEMBLA0A1U7WKJ52e-85A0A1U7WKJ5_NICSY; ethylene-responsive transcription factor ABR1-like isoform X1
STRINGXP_009777816.13e-86(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43222140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.15e-16ERF family protein